| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,389,791 – 15,389,898 |
| Length | 107 |
| Max. P | 0.655046 |
| Location | 15,389,791 – 15,389,898 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.99 |
| Mean single sequence MFE | -23.05 |
| Consensus MFE | -4.87 |
| Energy contribution | -8.79 |
| Covariance contribution | 3.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.655046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15389791 107 + 27905053 UUGACCCACUUGGCGGUGUUAUAUAUCAUAACUCACAAUAUUUAGACACGUAUAUUUAUAUGGUGGUGUUUGUGGCAAGGCUAUGAAAACCGUUUAAAAUGCAAAUA ............((((.(((((.....))))).)......(((((((.(((((....)))))..(((.((..((((...))))..)).)))))))))).)))..... ( -21.50) >DroSec_CAF1 142469 105 + 1 UUGACCCACUUGGCGGUGUUAUAUAUCAUAACUGCCAAUAUUUAGACACGUAUAU--AUAUUAUGGUGUUUGUGGGACGGUUAUGAAAACCGUUUAAAAUUCAAAUA (((((((((((((((((.............)))))))).....((((((.((((.--....)))))))))))))))((((((.....)))))).......))))... ( -32.52) >DroSim_CAF1 146611 100 + 1 UUGACCCACUUGGCGGUGUUAUAUAUCAUAACUGCCAAUAUUUAGACACGUAUAU--A-----UGGUGUUUGUGCCACGGUUAUGAAAACCGUUUAAAAUUCAAAUA ((((.....((((((((.............))))))))..(((((((........--.-----((((......)))).((((.....)))))))))))..))))... ( -23.52) >DroEre_CAF1 139986 89 + 1 UUGACCCAGUUGUAGGCUUAAUAUAACGAAACUAUAA--------------AU----UUAUUAUGGUGUCUGCGGCGAGGUUAUGAAAACCGUUUAAAAUUCAAAUA .(((((..(((((((((....(((((..((.......--------------.)----)..)))))..)))))))))..)))))........................ ( -20.20) >DroYak_CAF1 158548 103 + 1 UUGACCCAGUUGGCGGUUUAAUAUACCAUGACUUCAAAUAGUUCUAUACGUAU----UUAUUAUGGUUUCUGCGGCGAGCUUUUGAAAACCGUUUAAAAUUCAAAUA ((((.......((((((((.....(((((((....(((((((.....)).)))----)).)))))))....((.....))......))))))))......))))... ( -17.52) >consensus UUGACCCACUUGGCGGUGUUAUAUAUCAUAACUGCCAAUAUUUAGACACGUAUAU__AUAUUAUGGUGUUUGUGGCAAGGUUAUGAAAACCGUUUAAAAUUCAAAUA ((((.......((((((........(((((((((........(((((((................))))))).....)))))))))..))))))......))))... ( -4.87 = -8.79 + 3.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:35 2006