Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,378,208 – 15,378,301 |
Length | 93 |
Max. P | 0.837885 |
Location | 15,378,208 – 15,378,301 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 77.34 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -13.34 |
Energy contribution | -14.01 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.34 |
Mean z-score | -2.27 |
Structure conservation index | 0.47 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15378208 93 - 27905053 GUUAAUUUAUGG---------------------CAGCAGCCAUAAAACUGUGUUGAGUGGGCUUAAAGAGCCGG-GAACUGCUGUUUGGGCAAUUCAAGUAAACCGCAUAAUUCC-- .....(((((((---------------------(....))))))))..((((((((((..(((((((.(((.(.-...).))).))))))).))))))......)))).......-- ( -29.60) >DroPse_CAF1 175486 113 - 1 GUUAAUUUAAGGAUUCUAAAUUACUCUAGAGGGCAGAGUCCUUAAA---GAGAUGAAAGGGCAAGCAGGACUGG-UAGCUUAAGAGCCGCCAAUUAAAGCAAAUUUCAUAACCCCAA .....((((((((((((......(((....))).))))))))))))---...((((((..((......((.(((-..(((....)))..))).))...))...))))))........ ( -27.60) >DroSec_CAF1 131005 93 - 1 GUUAAUUUAUGG---------------------CAGCAGCCAUAAAACUGUGUUGAGUGGGCUUAAAGAGCCGG-GAACUGCUGUUUGGGCCAUUUAAGUAAACCGCAUAAUUCC-- .....(((((((---------------------(....))))))))..((((((((((((.((((((.(((.(.-...).))).))))))))))))))......)))).......-- ( -30.20) >DroSim_CAF1 135089 93 - 1 GUUAAUUUAUGG---------------------CAGCAGCCAUAAAACUGUGUUGAGUGGGCUUAAAGAGCCGG-GAACUGCUGUUUGGGCCAUUUAAGUAAACCGCAUAAUUCC-- .....(((((((---------------------(....))))))))..((((((((((((.((((((.(((.(.-...).))).))))))))))))))......)))).......-- ( -30.20) >DroEre_CAF1 128687 93 - 1 GUUAAUUUAUGG---------------------CAGCAGCCAUGAAACUGUGUUGAGUGGACUUAAAGAGCCGGGGAACUGCUGUUUG-GCAAUUUAAGUAAGCCGCAUAAUUCC-- .....(((((((---------------------(....))))))))..(((((.(.((..(((((((..((((((.(.....).))))-))..)))))))..)))))))).....-- ( -27.80) >DroYak_CAF1 146370 92 - 1 GUUAAUUUAUGG---------------------CAGCAGCCAUGAAACUGUGUUGAGUGGGCUUAAAGAGCCGG-GAACUGCUGUUUG-GUAAUUUAAGUAAACCGCAUAAUUCC-- .....(((((((---------------------(....))))))))..(((((.(.((..(((((((..(((..-((((....)))))-))..)))))))..)))))))).....-- ( -26.00) >consensus GUUAAUUUAUGG_____________________CAGCAGCCAUAAAACUGUGUUGAGUGGGCUUAAAGAGCCGG_GAACUGCUGUUUGGGCAAUUUAAGUAAACCGCAUAAUUCC__ .....(((((((...........................))))))).....((((.(((((((((((..(((...((((....)))).)))..)))))))...)))).))))..... (-13.34 = -14.01 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:34 2006