Locus 5867

Sequence ID 3R_DroMel_CAF1
Location 15,376,885 – 15,376,995
Length 110
Max. P 0.864740
window9594

overview

Window 4

Location 15,376,885 – 15,376,995
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 94.27
Mean single sequence MFE -20.98
Consensus MFE -17.86
Energy contribution -18.06
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.85
SVM decision value 0.84
SVM RNA-class probability 0.864740
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15376885 110 + 27905053
AAAGCAAAGUUUUGAAGGGGAUAAGUGAAAGGAAAUGGGAAAAAAAUAUUUUCGAGUUUAAACAGAGCGGUCGCCAAACUUCUUCAAAGAAACUUAUGAGCCAUUCAUGA
.........(((((((((((....((((..(((((((.........)))))))..((((.....))))..))))....)))))))))))....(((((((...))))))) ( -20.60)
>DroSec_CAF1 129626 110 + 1
AAAGCAAAGUUUUGAAGGGGAUAAGUGAAAGGAAAUGGUAAAAAAAUAUUUUCGGGUUUAAACAGAGCGGUCGCAAAACUUCUUCAAAGAAGAAGUUUUGUCAUUCAUGA
............((((...(((..((((..(((((((.........)))))))..((((.....))))..))))(((((((((((...)))))))))))))).))))... ( -22.80)
>DroSim_CAF1 133726 109 + 1
AAAGCAAAGUUUUGAAGGGGAUAAGUGAAAGGAAAUGGUAAA-AAAUAUUUUCGAGUUUAAACAGAGCGGUCGCAAAACUUCUUCAAAGAAACUUAUGAGCCAUUCAUGA
.........(((((((((((....((((..(((((((.....-...)))))))..((((.....))))..))))....)))))))))))....(((((((...))))))) ( -21.40)
>DroEre_CAF1 127322 110 + 1
AAAGCAAAGUUUUGAAGGGGAUAAGUGAAAGGAAAUGGGAAAAAAAUAUUUUCGAGUUUAAACAGAGCGGUCGCAAAACUUCUUCAAAGAAACUUAGCAGCCAUUCAUGA
...((.((((((((((((((....((((..(((((((.........)))))))..((((.....))))..))))....))))))))...)))))).))............ ( -22.80)
>DroYak_CAF1 143344 109 + 1
AAAGCAAAGUUUUGAAGGGGAUAAGUGAAAGGAAAUGGGAAA-AAAUAUUUUCGAGUUUAAACAGAGCGGUCGCAAAACUUCAUCAAAGAAACUUAUGAGCCAUUCAUGA
.........((((((.((((....((((..(((((((.....-...)))))))..((((.....))))..))))....)))).))))))....(((((((...))))))) ( -17.30)
>consensus
AAAGCAAAGUUUUGAAGGGGAUAAGUGAAAGGAAAUGGGAAAAAAAUAUUUUCGAGUUUAAACAGAGCGGUCGCAAAACUUCUUCAAAGAAACUUAUGAGCCAUUCAUGA
.........(((((((((((....((((..(((((((.........)))))))..((((.....))))..))))....)))))))))))..................... (-17.86 = -18.06 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:33 2006