| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,373,327 – 15,373,425 |
| Length | 98 |
| Max. P | 0.940186 |
| Location | 15,373,327 – 15,373,425 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.00 |
| Mean single sequence MFE | -24.95 |
| Consensus MFE | -19.10 |
| Energy contribution | -20.77 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.940186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15373327 98 + 27905053 AUUUUGAAGUCCUUGGCAUGUUUAAAUUCAGAGACUUUGG--CAAAAGUCG-------------CGGGCUAACAUUCAUUAAAUCCUAAUUUGCCGAGGAUUACGAGCAGAUA ..((((.(((((((((((.(((........(.((((((..--..)))))).-------------)((..(...........)..)).))).))))))))))).))))...... ( -25.30) >DroSec_CAF1 126007 98 + 1 AUUUUGAAGUCCUUGGCAUGUUUAAAUUCGAAGACUUUGG--CAAAAGUCG-------------CGGGAUAACAUUCAUUAAAUCCUAAUUUGCCGAGGAUUACGAGCAGAUA ..((((.(((((((((((.(((..........((((((..--..)))))).-------------.(((((............)))))))).))))))))))).))))...... ( -28.90) >DroSim_CAF1 130116 98 + 1 AUUUUGAAGUCCUUGGCAUGUUUAAAUUCGAAGACUUUGG--CCAAAGUCG-------------CAGGAUAACAUUCAUUAAAUCCUAAUAUGCCGAGGAUUACGAGCAGAUA ..((((.(((((((((((((((..........((((((..--..)))))).-------------.(((((............)))))))))))))))))))).))))...... ( -32.50) >DroEre_CAF1 123842 98 + 1 AUUUUGGAGUCCUUUGCAUGCUUAAAUUCGGGGACUUUGG--CCAAAGUCG-------------CGGGAUAACAUUCAUUUAAUCCUAAUUUGCCGAGGAUUACGAGCAGAUA ..((((.(((((((.(((............(.((((((..--..)))))).-------------)(((((............)))))....))).))))))).))))...... ( -24.30) >DroAna_CAF1 118190 88 + 1 AUUUUAAAGUGCCUC----------UUCCAGGGAAUUUUC--UAAAAGUCG-------------CGGGAUAACAUUCAUUAAAUCCUAAUUUGUCGAGGAUUACGAGCAGAUA .........(((.((----------.(((.(.((.(((..--..))).)).-------------).)))............((((((.........))))))..))))).... ( -12.60) >DroPer_CAF1 164432 104 + 1 AUUUUUAAGUGCUCU---UUUUUG---GCUGAGACUUUAGGCCAAAAGUCGUCGUCCUCGUGCCCGGGAUAACAUUCAUUAAAUCCUAAUUUGCAGAGCAUUACGACUCG--- .......((((((((---((((((---(((.........)))))))))..((..(((.((....)))))..)).....................))))))))........--- ( -26.10) >consensus AUUUUGAAGUCCUUGGCAUGUUUAAAUUCGGAGACUUUGG__CAAAAGUCG_____________CGGGAUAACAUUCAUUAAAUCCUAAUUUGCCGAGGAUUACGAGCAGAUA ...(((.(((((((((((..............((((((......))))))...............(((((............)))))....))))))))))).)))....... (-19.10 = -20.77 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:30 2006