| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,370,594 – 15,370,705 |
| Length | 111 |
| Max. P | 0.582171 |
| Location | 15,370,594 – 15,370,705 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 77.56 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -11.40 |
| Energy contribution | -12.23 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15370594 111 + 27905053 UCCGCGUAA-AACUGAGAAAUGGCGCAUGAAAAGCGCCAACAAACUUUAAUUAGUUAUGCAAAGCGAAUGCAGCUUUGGGAGCGAACAA--AGAAGGCAGGGAAAAUACAACGA- ((((((((.-.(((((..((((((((.......)))))).......))..))))))))))........(((..(((((........)))--))...))).)))...........- ( -28.21) >DroVir_CAF1 148810 111 + 1 UGCAUACAAAAGCUGAGAAAUGGCGCAUCAGAAGCGGCAACAAACUUUAAUUAGUUAUGCAAAGCGAGCGCUGCUCUGGGACAUUAAAA--AGU-AGCACAU-GAAAAAUGCAAG (((((......(((.......)))((.(((((.(((((....((((......))))..((.......)))))))))))).((.......--.))-.))....-.....))))).. ( -25.00) >DroGri_CAF1 156528 111 + 1 UGCACACAAAAGCUGAGAAAUGGCGCAUGAGAAGCGGCAACAAACUUUAAUUAGUUAUGCAAAGCGAGCACAGCUCUGGGACAUUAAAA--ACU-AGCACAU-AAAAAAUGAAAA (((........(((......((.(((.......))).))...((((......))))......)))((((...)))).............--...-.)))...-............ ( -17.10) >DroSec_CAF1 123285 109 + 1 UCCACGCAA-AACUGAGAAAUGCCGCAUGAAAAGCGCCAACAAACUUUAAUUAGUUAUGCAAAGCGAAUGCAGCUUUGGGAGCGAACAA--AGA-GGCAGAA-AAAAAAUACAA- .........-..........((((.........((.((....((((......))))...((((((.......)))))))).))......--...-))))...-...........- ( -20.67) >DroEre_CAF1 121097 107 + 1 UCCACGCAA-AACUGAGAAAUGGCGCAUGAAAAGCGCCAACAAACUUUAAUUAGUUAUGCAAAGCGAAUGCAGCUUUGGGAGCGAACAA--AGA-GGCAGGG---AAAAUAAAA- (((..(((.-((((((..((((((((.......)))))).......))..)))))).)))........(((..(((((........)))--)).-.))).))---)........- ( -30.01) >DroAna_CAF1 115703 94 + 1 UCCGCGCCA-GA---AGAAAUAGCGCAUGAA-AGCGCCAACAAACUUUAAUUAGUUAUGCAAAGCGAAUGCAGCUUUGGGACUGAACAGCUAAA-GGCAA--------------- .....(((.-((---((.....((((.....-.)))).......))))..((((((...((((((.......)))))).)))))).........-)))..--------------- ( -24.30) >consensus UCCACGCAA_AACUGAGAAAUGGCGCAUGAAAAGCGCCAACAAACUUUAAUUAGUUAUGCAAAGCGAAUGCAGCUUUGGGACCGAACAA__AGA_GGCAGAG_AAAAAAUACAA_ (((.................((.(((.......))).))...((((......))))...((((((.......))))))))).................................. (-11.40 = -12.23 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:28 2006