| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,366,653 – 15,366,750 |
| Length | 97 |
| Max. P | 0.755550 |
| Location | 15,366,653 – 15,366,750 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 89.74 |
| Mean single sequence MFE | -24.30 |
| Consensus MFE | -20.90 |
| Energy contribution | -21.65 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15366653 97 - 27905053 GAUUCUCC--GCUCAUUCAUUUUUGUGCUUUGGGUAAUUUGUCAUUGUUGGCAGCAGAUACAUGGUGUAUCUGUGUGUGGAUUGCUGGAUUUCCUCUCC .....(((--((.((........)).))....((((((((((((....)))).((((((((.....))))))))....))))))))))).......... ( -25.30) >DroSec_CAF1 119373 89 - 1 GAUUCUCCCUGCUCAUUCAUUUUUGUGCUUUGGGUAAUUUGUCAUUGUUGGCAGCAGAUACAUGGUGUAUCUGUGUGUGGAUUGCUGGA---------- (((((.(((.((.((........)).))...))).....(((((....)))))((((((((.....))))))))....)))))......---------- ( -23.50) >DroSim_CAF1 123087 94 - 1 GAUUCUCCCCGCUCAUUCAUUUUUGUGCUUUGGGUAAUUUGUCAUUGUUGGCAGCAGAUACAUGGUGUAUCUGUGUGUGGAUUGCUGGAUUUCU----- ((...(((..((.((........)).))....((((((((((((....)))).((((((((.....))))))))....)))))))))))..)).----- ( -24.80) >DroEre_CAF1 117278 95 - 1 GAUUCUCC--GCUCAUUCAUUUUUGUGCUUUG-GUAAUUUGUCAUUGUUGGCAGCAGAUACAUGUUGUUUCUGUGUGUGGAUUGGAGGAUUUCUUC-CC ((((((((--(.((...(((............-......(((((....)))))(((((.((.....)).))))))))..)).))))))))).....-.. ( -23.60) >consensus GAUUCUCC__GCUCAUUCAUUUUUGUGCUUUGGGUAAUUUGUCAUUGUUGGCAGCAGAUACAUGGUGUAUCUGUGUGUGGAUUGCUGGAUUUCU_____ .....(((..((.((........)).))....((((((((((((....)))).((((((((.....))))))))....))))))))))).......... (-20.90 = -21.65 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:27 2006