Locus 5861

Sequence ID 3R_DroMel_CAF1
Location 15,362,958 – 15,363,057
Length 99
Max. P 0.529857
window9587

overview

Window 7

Location 15,362,958 – 15,363,057
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 93.10
Mean single sequence MFE -19.06
Consensus MFE -15.52
Energy contribution -16.27
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.81
SVM decision value -0.01
SVM RNA-class probability 0.529857
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15362958 99 + 27905053
UAUAAAGUCGUACACCUAUACAGCAUACACCCAUACAGCCACAAAUUCCACCCACACUGAGGCAAUGGCCACGCACAGAUUGCGGCAACAAAAUCUGUA
......((.(((......))).))......((((...(((.((..............)).))).))))......(((((((..(....)..))))))). ( -16.64)
>DroSec_CAF1 115688 99 + 1
UAUAAAGUCGUACACCUAUACAGCGUACACCCAUACAGCCCCACAUUCCACCCACACUGAGGCAGUGGCCACGCACAGAUUGCGGCAACAAAAUCUGUA
.........(((......))).((((....((((...(((.((..............)).))).))))..))))(((((((..(....)..))))))). ( -20.94)
>DroSim_CAF1 119395 99 + 1
UAUAAAGUCGUACACCUAUACAGCGCACACCCAUACAGACCCACAUACCACCCACACUGAGGCAGUGGCCACGCACAGAUUGCGGCAACAAAAUCUGUA
......((.(((......))).))((.........(((..................))).(((....)))..))(((((((..(....)..))))))). ( -17.77)
>DroEre_CAF1 113513 97 + 1
UAUCAAGUCGUACACCUACACAGCGUACACCCAUACCGC--CACACUCCACCCACACUGAGGCAGCGGCCACGCACAGAUUGCGGCAACAAAAUCUGUA
.........((((.(.......).)))).........((--(.((............)).))).(((....)))(((((((..(....)..))))))). ( -20.90)
>consensus
UAUAAAGUCGUACACCUAUACAGCGUACACCCAUACAGCCCCACAUUCCACCCACACUGAGGCAGUGGCCACGCACAGAUUGCGGCAACAAAAUCUGUA
......................((((.........(((..................))).(((....)))))))(((((((..(....)..))))))). (-15.52 = -16.27 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:26 2006