Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,360,303 – 15,360,410 |
Length | 107 |
Max. P | 0.665909 |
Location | 15,360,303 – 15,360,410 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.80 |
Mean single sequence MFE | -19.95 |
Consensus MFE | -16.75 |
Energy contribution | -17.25 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.05 |
Mean z-score | -1.55 |
Structure conservation index | 0.84 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15360303 107 - 27905053 CACUCAAAGCUCCCCA--CUCCCAUCUCGAAAACCCGCUCCCUCAUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU ................--..((((((.(((..((.(((........))).))..))).)))).))...(((((.(((....)))...)))))................. ( -20.50) >DroSec_CAF1 113059 109 - 1 CACUCCUCACUCCCCCCACUCCCAUCUCGAAAACCCGCUCCCUCGUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAAUUUUAACAAACU ....................((((((.(((..((.(((........))).))..))).)))).))...(((((.(((....)))...)))))................. ( -20.50) >DroSim_CAF1 116744 107 - 1 CACUCCACACUCCCCC--CUCCCAUCACAAAAACCCGCUCCCUCGUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU ................--..((((((((((..((.(((........))).))..)))))))).))...(((((.(((....)))...)))))................. ( -24.80) >DroEre_CAF1 108871 92 - 1 C-----------------AUCCCAACCCAAAAUCCCGCUCCCUCAUACGCGUCCUUGUGAUGUGGUCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU .-----------------......................((.(((.((((....))))))).))...(((((.(((....)))...)))))................. ( -14.00) >consensus CACUCCACACUCCCCC__CUCCCAUCUCAAAAACCCGCUCCCUCAUGCGCGUCCUUGUGAUGUGGCCAUGUCAUUGCCUCGGCAUGCUGAUAAAAAUUUUUAACAAACU ....................((((((.(((..((.(((........))).))..))).)))).))...(((((.(((....)))...)))))................. (-16.75 = -17.25 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:25 2006