Locus 5859

Sequence ID 3R_DroMel_CAF1
Location 15,355,771 – 15,355,885
Length 114
Max. P 0.705941
window9585

overview

Window 5

Location 15,355,771 – 15,355,885
Length 114
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 79.29
Mean single sequence MFE -28.28
Consensus MFE -17.25
Energy contribution -17.28
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.70
Structure conservation index 0.61
SVM decision value 0.36
SVM RNA-class probability 0.705941
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15355771 114 - 27905053
AAGAUUAAUAAUAAUAACUGCGACUAGCCCAGCGGUUGGUCAGCAAGUGGCAUAAUCAUGAUUUAUGACACGCAAUUAAUAAGCGACAUGGUCAAGGG---GGCGUCGC-GCCGUGCA
..................(((((((((((....)))))))).))).(((.(((((.......))))).)))(((........(((((...(((.....---))))))))-....))). ( -31.60)
>DroVir_CAF1 132764 101 - 1
AAGAUUAAUAAUAAUAACUACGACUAGCGCAGCGGUUGGUCAGCAAGUGGCAUAAUCAUGAUUUAUGACAUGCAAUUAAUAAGCGGCAUGG----------------CCGGACAAGC-
...((((((............(((((((......))))))).(((..((.(((((.......))))).))))).))))))...((((...)----------------))).......- ( -21.60)
>DroGri_CAF1 137942 100 - 1
AAGAUUAAUAAUAACAGCCACGACUAGCACAGCGGUUGGUCAGCAAGUUGCAUAAUCAUGAUUUAUGAUAUGCAAUUAAUAAACAACAUGG----------------CC-GACAAGC-
..............(.((((.(((((((......)))))))....(((((((((.(((((...))))))))))))))...........)))----------------).-)......- ( -25.60)
>DroWil_CAF1 143711 94 - 1
AAGAUUAAUAAUAAUAACUGCGACUAGCCCAGUGGUUGGUCAGCAAGUGGCAUAAUCAUGAUUUAUGACAUGCAAUUAAUAAGCGACACGGCUA------------------------
...((((((.......(((((((((((((....)))))))).)).))).((((..(((((...))))).)))).)))))).(((......))).------------------------ ( -23.30)
>DroMoj_CAF1 131011 117 - 1
AAGAUUAAUAUUAAUAACUGCGACUAGCGCAGCGGUUGGUCAGCAAGUGGCAUAAUCAUGAUUUAUGGCAUGCAAUUAAUAAGCGACAUGGACCGGACCGGAGCGGUCUGGACAGGC-
........(((((((...((((((((((......))))))).....(((.(((((.......))))).))))))))))))).((....((..((((((((...)))))))).)).))- ( -34.50)
>DroAna_CAF1 100499 114 - 1
AAGAUUAAUAAUAAUAACUGCGACUAGCCCAGCGGUUGGUCAGCUAGUGGCAUAAUCAUGAUUUAUGACAUGCAAUUAAUAAGCGACAUGGCCCUGGA---GGCGGGAC-AGGGCGGA
...((((((.......(((((((((((((....)))))))).)).))).((((..(((((...))))).)))).))))))..........((((((..---.......)-)))))... ( -33.10)
>consensus
AAGAUUAAUAAUAAUAACUGCGACUAGCCCAGCGGUUGGUCAGCAAGUGGCAUAAUCAUGAUUUAUGACAUGCAAUUAAUAAGCGACAUGG_C______________CC_GACAAGC_
...((((((............(((((((......))))))).((..(((.(((((.......))))).))))).))))))...................................... (-17.25 = -17.28 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:24 2006