| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,354,052 – 15,354,156 |
| Length | 104 |
| Max. P | 0.500000 |
| Location | 15,354,052 – 15,354,156 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.17 |
| Mean single sequence MFE | -18.27 |
| Consensus MFE | -10.45 |
| Energy contribution | -11.48 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.57 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15354052 104 - 27905053 A----UAUAAACUCGAAUUUGCCACUUCAUGCGUCCCCAAGGAGUCAA----AGGACUCAAACACGUUCACACAUGAACCCUUCACAUUCAUAGCCCUCUACGCAGACCGCA .----.........((((.((....((((((.((.......(((((..----..)))))..........)).)))))).....)).))))...((..(((....)))..)). ( -17.73) >DroSec_CAF1 106875 108 - 1 A----UAUAAACUGGAAUUUGCCACUUCAUGCGUCCCCAAGGAGUCAAAGAAAGGACUCCAACACGUUCACACAUGAACCCUUUACAUUCAUAGACCUCUCCGCAGACCGCA .----........(((....((........))(((.....((((((........)))))).....(((((....)))))..............)))...)))((.....)). ( -20.20) >DroSim_CAF1 110478 108 - 1 A----UAUAAACUGGAAAUUGCCACUUCAUGCGUCCCCAAGGAGUCAAAUAAAGGACUCCAACACGUUCACACAUGAACCCUUUACAUUCAUAGACCUCUCCGCAGACCGCA .----........(((....((........))(((.....((((((........)))))).....(((((....)))))..............)))...)))((.....)). ( -20.20) >DroEre_CAF1 102809 100 - 1 A----UAUAAACUCCAAUAUGCCCGUUCAUGCGUCCCCAAGGAGUCAA----AGGACUCCAAUACGUUCACACAUGAACCCUUUACAGUCA----CCGCUUGCCAGACCGCA .----..............(((..(((((((.((......((((((..----..)))))).........)).)))))))........(((.----..........))).))) ( -19.86) >DroYak_CAF1 133678 99 - 1 A----UAUAAACUCGAAUAUGCCCGUUCAUGCGUCCCCAAGCAGUCAA----AGGACUCCAACACGUUUACACAUGAACCCU-UACAUUCA----CCACUUGCCAGACCGCA .----.........((((.((...(((((((.((....((((((((..----..)))).......)))))).)))))))...-)).)))).----.....(((......))) ( -13.91) >DroAna_CAF1 98946 93 - 1 ACUCGUAUAAACUCAAUUUCAACAUUUCAUGCAUCCCAAAGGACUCGA----GCGAAUUCAACACGUUCGCACAC---------ACCGACA------CAGGGGGAAGCCACA ..............................((.((((...........----((((((.......))))))....---------.((....------..)))))).)).... ( -17.70) >consensus A____UAUAAACUCGAAUUUGCCACUUCAUGCGUCCCCAAGGAGUCAA____AGGACUCCAACACGUUCACACAUGAACCCUUUACAUUCA____CCUCUCCGCAGACCGCA .............................((((((.....((((((........)))))).....(((((....)))))..........................)).)))) (-10.45 = -11.48 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:23 2006