| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,348,071 – 15,348,161 |
| Length | 90 |
| Max. P | 0.511313 |
| Location | 15,348,071 – 15,348,161 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.44 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -15.06 |
| Energy contribution | -15.65 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.511313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15348071 90 - 27905053 -------AAACUAACAAGCCUUUUUC--CCCUGUGUAGAUCCACCUGCUGACCCUCUUGGAGCAUUGCACCCUGCAGCAGCGCAGGCUAC------------ACAAAAUGC -------...................--...(((((((.....(((((....((....)).((.((((.....))))..)))))))))))------------)))...... ( -22.00) >DroSec_CAF1 100931 90 - 1 -------GAACAUACACCCUUUUUUC--CCUUGUGUAGACCCACCUGCUGACCCUCUUGGAGCAUUGCACCCUGCAGCAGCGCACGGCAC------------ACAUAAUGC -------...................--...(((((.(.((..(((((((..((....)).((...))......)))))).)...)))))------------)))...... ( -16.50) >DroSim_CAF1 104499 91 - 1 ------AAAACUAAUAUGCCUUUUUU--CCUUGUGUAGACCCACCUGCUGACCCUCUUGGAGCAUUGCACCCUGCAGCAGCGCAGGGCAC------------ACAAAAUGC ------....................--..((((((.........(((((..((....))..))..)))((((((......)))))).))------------))))..... ( -21.30) >DroEre_CAF1 96324 95 - 1 --UAAGCGCACUAACCAGACUUUUCC--CCCUGUGUAGACCCACCUGCUGACCCUCCUGGAGCAUUGCACCCUGCAACAGCGCAGGGCAC------------ACAAAAUGC --...((((((((..(((........--..)))..))).......((((...((....)))))).))).((((((......))))))...------------.......)) ( -22.30) >DroYak_CAF1 127524 97 - 1 CUAAAAUAUACUAAGAAGUCUUUUCG--CCCUGUGCAGACCCACCUGCUGACCCUCUUGGAGCAUUGCACCCUGCAGCAGCGCAGGGCAC------------ACAAAAUGC .........................(--((((((((.........((((...((....))))))((((.....))))..)))))))))..------------......... ( -27.20) >DroAna_CAF1 93439 96 - 1 --------------UAACCCUUUUCGGGCUCAGUGCAGGCACACCUGCUGACCCUUUCGGAGCAUUGCACCCUGCAUCAACAGAAGGCCCGAGAACCGGCUUAC-AAAUGC --------------(((.(((((((((((((((((((((....))).((((.....)))).))))))....(((......)))..))))))))))..)).))).-...... ( -28.00) >consensus _______AAACUAACAAGCCUUUUCC__CCCUGUGUAGACCCACCUGCUGACCCUCUUGGAGCAUUGCACCCUGCAGCAGCGCAGGGCAC____________ACAAAAUGC ............................((((((((.........((((...((....))))))((((.....))))..))))))))........................ (-15.06 = -15.65 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:20 2006