Locus 5853

Sequence ID 3R_DroMel_CAF1
Location 15,335,297 – 15,335,390
Length 93
Max. P 0.999896
window9578

overview

Window 8

Location 15,335,297 – 15,335,390
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 96.56
Mean single sequence MFE -28.80
Consensus MFE -26.08
Energy contribution -27.25
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -3.85
Structure conservation index 0.91
SVM decision value 4.43
SVM RNA-class probability 0.999896
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15335297 93 + 27905053
CAAAUUGAAUUCACCAUGCAACAAUUAAACACAAAUCUCGGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUGUAUGGCA
.............(((((((....................((.....))(((((((((....(((......))).)))))))))))))))).. ( -27.30)
>DroSec_CAF1 88122 93 + 1
CAAAUUGAAUUCGCCAUGCCACAAUUAAACACAAAUCUCGGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUGUAUGGCA
............(((((((.....................((.....))(((((((((....(((......))).))))))))).))))))). ( -30.00)
>DroSim_CAF1 89930 93 + 1
CAAAUUGAAUUCGCCAUGCAACAAUUAAACACAAAUCUCGGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUGUAUGGCA
............((((((((....................((.....))(((((((((....(((......))).))))))))))))))))). ( -31.80)
>DroEre_CAF1 83604 93 + 1
CAAAUUGAAUUCGCCAUGCAACAAUUAAACACAAAUCUCGGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUGUAUGGCU
............((((((((....................((.....))(((((((((....(((......))).))))))))))))))))). ( -31.30)
>DroYak_CAF1 94958 93 + 1
CAAAUUGAAUUCGCCAUGCAACAAUUAAACACAAAUCUCGGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUGUAUGGCA
............((((((((....................((.....))(((((((((....(((......))).))))))))))))))))). ( -31.80)
>DroAna_CAF1 81778 93 + 1
CAAAUUGAAUUCGCCAUGCAACAAUUAAACACAAAUCUCAGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUCUCUUUGU
...........................................(((((.(((((((((....(((......))).)))))))))...))))). ( -20.60)
>consensus
CAAAUUGAAUUCGCCAUGCAACAAUUAAACACAAAUCUCGGCUCAAAGCAAAUGGCGGAAAAGGCGUCACAGCCGUCGCCAUUUUGUAUGGCA
............((((((((....................((.....))(((((((((....(((......))).))))))))))))))))). (-26.08 = -27.25 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:17 2006