Locus 5852

Sequence ID 3R_DroMel_CAF1
Location 15,334,586 – 15,334,677
Length 91
Max. P 0.934535
window9577

overview

Window 7

Location 15,334,586 – 15,334,677
Length 91
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.33
Mean single sequence MFE -18.81
Consensus MFE -10.77
Energy contribution -11.60
Covariance contribution 0.83
Combinations/Pair 1.09
Mean z-score -1.98
Structure conservation index 0.57
SVM decision value 1.24
SVM RNA-class probability 0.934535
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15334586 91 - 27905053
AAUCAGCCGGUA--GGUACCGUUAUUACCUGCCGGCAAAGUAAACAAAAACAAAGCAC------UAAAAGACGUAACCGACUAAUGAAGGCCCUU-ACUU--
.....(((((((--((((.......))))))))))).((((((.............((------........))..((..(....)..))...))-))))-- ( -23.30)
>DroSec_CAF1 87408 92 - 1
AAUCAGCCGGUA--GGAACCGUUAUUACCUGCCGGCAAAGUAAACAAAAACAAAGCAC------UAAAAGACCUAACCGACUUAUGAAGGCCCUC-ACUUU-
.....(((((((--((...........)))))))))......................------..((((......((..(....)..)).....-.))))- ( -18.60)
>DroSim_CAF1 89218 92 - 1
AAUCAGCCGGUA--GGUACCGUUAUUACCUGCCGGCAAAGUAAACAAAAACAAAGCAC------UAAAAGACCUAGCCGACUUAUGAAGGCCCUC-ACUUU-
.....(((((((--((((.......)))))))))))......................------..((((.....(((..(....)..)))....-.))))- ( -25.50)
>DroEre_CAF1 82902 90 - 1
AAUCAGCCGGUU--GAUACCGUUAUUACCUGCCGGCAAAAUAAACAAAAACAAAGCAG------UAGA--ACAUAACCGACGUGUGAAAACCCUU-ACUUU-
.....(((((((--((((....)))))...))))))................(((...------....--((((.......)))).......)))-.....- ( -13.04)
>DroYak_CAF1 94234 91 - 1
AAUCAGCCGGUU--GAUACCGUUAUUACCUGCCGGCAAAAUAAACAAAAACAAAGCAC------UAUA-CACAUAACCGACUUAUGAAAACCCGU-ACAUA-
.....(((((((--((((....)))))...))))))......................------....-..(((((.....))))).........-.....- ( -13.50)
>DroMoj_CAF1 103472 94 - 1
AAGCAGCCGGUAAAUAUAACGGU---ACUUGCCGGCAAAAUA--CGAAAC--GAACUAAAGACAGAUU-UGCAUGCCAAACUAAAGGAUACCCUGUAACAGU
..(((((((((((.(((....))---).))))))))......--.....(--(((((......)).))-))..)))........(((....)))........ ( -18.90)
>consensus
AAUCAGCCGGUA__GAUACCGUUAUUACCUGCCGGCAAAAUAAACAAAAACAAAGCAC______UAAA_GACAUAACCGACUUAUGAAGACCCUU_ACUUU_
.....(((((((..((((....))))...))))))).................................................................. (-10.77 = -11.60 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:16 2006