| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,333,561 – 15,333,665 |
| Length | 104 |
| Max. P | 0.976727 |
| Location | 15,333,561 – 15,333,665 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 77.66 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -16.90 |
| Energy contribution | -17.73 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.80 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.976727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15333561 104 - 27905053 GGCACACUGAACUCUUAAGAAUAUUGAGAGUGGUGCCAAAAGGGGCAGGGUCGGAAAAUAGGGAAAUUGCUAGACCAAUGG---GGCGGGGAAAACCGCUGCCAGAU (((((.....((((((((.....)))))))).)))))......(((..((((....(((......)))....)))).....---(((((......)))))))).... ( -37.90) >DroSec_CAF1 86376 103 - 1 GGCACACUGAACUCUCGAGAAUAUUGAGAGUGGUGCCAAAAGGGCCAGGGUCGGAAAAUAGGGAAAUUGCUGGACCA-AGG---GGCGGGGAAAACCGCUGCCAGAU (((((.....((((((((.....)))))))).)))))....((.((..((((.(..(((......)))..).)))).-.))---(((((......))))).)).... ( -39.40) >DroSim_CAF1 88146 103 - 1 GGCACACUGAACUCUCGAGAAUAUUGAGAGUGGUGCCAAAAGGGGCAGGGUCGGAAAAUAGGGAAAUUGCUAGACCA-UGG---GGAGGGGAAAACCGCUGCCAGAU (((((.....((((((((.....)))))))).)))))......(((((((((....(((......)))....)))).-...---...((......)).))))).... ( -37.20) >DroEre_CAF1 81865 100 - 1 --CACACCGAACUCUCGAGAAUAUUCAGAGUGGUGCCAAAAGGGGCAGGGUCGGAAAAUAGGGAAAUCGCUGGACCA-AGG---GGCGGGGA-AACCGCUCCCCGAU --....((..(((((.(((....))))))))..((((......))))))(((((....(((.(....).))).....-.((---(((((...-..)))))))))))) ( -34.40) >DroWil_CAF1 115867 98 - 1 --CGCGUUGCACUCUUGAGUAUCUUGUUUGUGUGGGUGGAACAGACAAAGUCAGAGAAGGAAAAAAUGAGU-GUGUA-UGGGAAGAAGGGGAACACCACC-----CU --(.((((((((((.......((((.((((..((..((...))..))....)))).)))).......))))-))).)-)).)....((((........))-----)) ( -22.64) >DroYak_CAF1 93241 100 - 1 --CACACCGAACACUCGAGAAUAUUGAGAGUGGUGCCAAAAGGGGCAGGGUCGGAAAAUAGGGAAAUCGCUAGACCA-AUG---GGUGGGGA-AACCGCUCCCAGAU --....((((.(((((...........))))).((((......))))...))))....(((.(....).))).....-.((---((.(((..-..)).).))))... ( -31.50) >consensus __CACACUGAACUCUCGAGAAUAUUGAGAGUGGUGCCAAAAGGGGCAGGGUCGGAAAAUAGGGAAAUUGCUAGACCA_AGG___GGCGGGGAAAACCGCUGCCAGAU ......((((((((((((.....))))))))..((((......))))...))))..............................(((((......)))))....... (-16.90 = -17.73 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:15 2006