Locus 585

Sequence ID 3R_DroMel_CAF1
Location 2,177,659 – 2,177,779
Length 120
Max. P 0.889276
window935

overview

Window 5

Location 2,177,659 – 2,177,779
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.83
Mean single sequence MFE -44.60
Consensus MFE -39.24
Energy contribution -40.44
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.52
Structure conservation index 0.88
SVM decision value 0.96
SVM RNA-class probability 0.889276
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2177659 120 - 27905053
GCAUAUUUAGCGAGUUGCCACGCAUAACUGCUGGCGACGGAGACUCUCAGCCGCUCCGACGUUGUCUAUUUUGGUUGCGGACGCCAGCCGAAAGCAGCAGGCGGAAAUGUUAUGCCUUUU
(((((....(((.(((((((.(((....))))))))))(....).......)))((((..(((((...((((((((((....).))))))))))))))...)))).....)))))..... ( -43.60)
>DroSec_CAF1 2753 120 - 1
GCAUAUUUAGCGACUGGCCACGCAUAACUGCUGGCGACGGCGACUCUCUGCCGCUGCGACGUUGUCUAUUUUGGUUGCGGACGCCAGCCGAAAGCAGCAGGCGGAAAUGUUAUGCCUUUU
((.......))..........((((((((((((....)))))....((((((((((((((...)))..((((((((((....).)))))))))))))).))))))...)))))))..... ( -46.30)
>DroSim_CAF1 2862 120 - 1
GCAUAUUUAGCGACUGGCCACGCAUAACUGCUGGCGACGGCGACUCUCUGCCGCUGCGACGUUGUCUAUUUUGGUUGCGGACGCCAGCCGAAAGCAGCAGGCGGAAAUGUUAUGCCUUUU
((.......))..........((((((((((((....)))))....((((((((((((((...)))..((((((((((....).)))))))))))))).))))))...)))))))..... ( -46.30)
>DroEre_CAF1 4556 120 - 1
GCAUAUUUUGCGACUUGCCACCCAUAACUGCUGGCGACGGCGACUCUCUGCCGCUGAGACGUUGUCUAUUUUGGUUGCGGACGCCAGCCGAAAGCAGCAGGCGGAAAUGUUAUGCCUUUU
(((.....)))...........(((((((((((....)))))....((((((((((((((...)))).((((((((((....).))))))))).)))).))))))...))))))...... ( -41.70)
>DroYak_CAF1 3070 120 - 1
GCAUGUUUUGCGACUUGCCACCCAUAACUGCUGGCGACGGCGUCUCUCUGCCGCUGCGACGUUGUCUAUUUUGGUUGCGGACGCCAGCCGAAAGCAGCAGGCGGAAAUGUUAUGUCUUUU
(((.(((....))).)))....((((((.((((....)))).....((((((((((((((...)))..((((((((((....).)))))))))))))).))))))...))))))...... ( -45.10)
>consensus
GCAUAUUUAGCGACUUGCCACGCAUAACUGCUGGCGACGGCGACUCUCUGCCGCUGCGACGUUGUCUAUUUUGGUUGCGGACGCCAGCCGAAAGCAGCAGGCGGAAAUGUUAUGCCUUUU
((.......))..........((((((((((((....)))))....((((((((((((((...)))..((((((((((....).)))))))))))))).))))))...)))))))..... (-39.24 = -40.44 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:47 2006