Locus 5848

Sequence ID 3R_DroMel_CAF1
Location 15,325,057 – 15,325,155
Length 98
Max. P 0.579563
window9568

overview

Window 8

Location 15,325,057 – 15,325,155
Length 98
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 78.45
Mean single sequence MFE -34.58
Consensus MFE -18.65
Energy contribution -19.29
Covariance contribution 0.64
Combinations/Pair 1.23
Mean z-score -1.79
Structure conservation index 0.54
SVM decision value 0.09
SVM RNA-class probability 0.579563
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15325057 98 - 27905053
ACCCCCAAAUGG--GUAAACAAAAGGUGAGCGGCCAAAAGGGGAGCGCUCUGGUGGGGCGAGGGGUGAG--GU-------GGG-GCUCGGUGGGCGAUAUAGCAACCCCA
.((((((..((.--.....))......(((((.((......))..)))))))).)))....((((((..--((-------(..-(((.....)))..)))..).))))). ( -34.90)
>DroSec_CAF1 77931 98 - 1
ACCCCCAAAUGG--GUAAACAAAAGGUGAGCGGCCAAAAGGGGAGUGCUCUGGUGGGGCGAGGGGUGAG--GU-------GGG-GUCCGGUGGGCAAUAGAGCAACCCCA
.((((((..((.--.....))......(((((.((......))..)))))))).)))....(((((...--((-------...-((((...))))......)).))))). ( -31.50)
>DroSim_CAF1 79637 98 - 1
ACCCCCAAAUGG--GUAAACAAAAGGUGAGCGACCAAAAGGGGAGCGCUCUGGUGGGGCGAGGGGUGAG--GU-------GGG-GGCCGGUGGGCGAUAGAGCAACCCCA
.((((((..((.--.....))......(((((.((.....))...)))))))).)))....(((((...--((-------.(.-.(((....)))..)...)).))))). ( -34.50)
>DroEre_CAF1 73609 101 - 1
ACCCCCAAAUGG--GUAAACAAAAGGUGAGUGGCCAAAAGGGGGGCGCUCCGGCGGGGCGAGGGGUGCG--GGGAG----GGG-GGCGGGCGUGUGAUAGAGCAACCCCA
.(((((...(((--.((.((.....))...)).)))...)))))(((((((.((...))..))))))).--.....----(((-(....((..........))..)))). ( -38.50)
>DroWil_CAF1 105996 95 - 1
ACCCCCAAAUGGGGGUAAACAAAAAACACG------AUAGCAAGGUGUGCUGGU---GAUUGGGGUGUGCGGGU------GGAUGCAAGGGGAGCCAAAAAGCAACCCCA
((((((....))))))..........(((.------.(((((.....)))))))---)..((((((.(((...(------((.(.(....).).)))....))))))))) ( -34.10)
>DroYak_CAF1 84624 105 - 1
ACCCCCAAAUGG--GUAAACAAAAGGUGAGCGGCCAAAAGGGGAGCGCUCUGGUGGGGCGAGGGGUGUG--GGGUGAUGAGGG-GGUAGGUGGGUGACAGAGCAACCCCA
(((((((..(..--((...((......(((((.((......))..)))))...))..))..)...)).)--))))......((-(((..((.(....)...)).))))). ( -34.00)
>consensus
ACCCCCAAAUGG__GUAAACAAAAGGUGAGCGGCCAAAAGGGGAGCGCUCUGGUGGGGCGAGGGGUGAG__GG_______GGG_GGCCGGUGGGCGAUAGAGCAACCCCA
.((((((..((........))......(((((.((......))..)))))))).)))....(((((...........................((......)).))))). (-18.65 = -19.29 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:08 2006