Locus 5846

Sequence ID 3R_DroMel_CAF1
Location 15,309,932 – 15,310,031
Length 99
Max. P 0.905415
window9565

overview

Window 5

Location 15,309,932 – 15,310,031
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 81.38
Mean single sequence MFE -36.63
Consensus MFE -24.90
Energy contribution -25.35
Covariance contribution 0.45
Combinations/Pair 1.33
Mean z-score -2.65
Structure conservation index 0.68
SVM decision value 1.04
SVM RNA-class probability 0.905415
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15309932 99 - 27905053
UUUGGAUGUUCUUCACCCUGAUCUCCACAACUUGGGCGGGAGAACUUGGGGCCUUUCGCUUAGUUUUCGCCGGUUUGGGUGGUGGAGUGUUGGUUACUU
...((.((.....))))(..((((((((.(((..((((((((((((..((((.....))))))))))).)).)))..))).)))))).))..)...... ( -33.60)
>DroSec_CAF1 62678 96 - 1
UUUGGAUGUUCUUCACCUUGAUCUCCACCACCUGGGCGGGAGAACUUGGGGCCUUUCGCUUAGUUUUUACCGGUUUAGGUGGUGGAGU---GGAUACCU
...((.(((((.((.....)).(((((((((((((((.((((((((..((((.....))))))))))..)).))))))))))))))).---))))))). ( -39.90)
>DroSim_CAF1 64456 96 - 1
UUUGGAUGUUCUUCACCUUGAUCUCCACAACUUGAGCGGGAGAACUUGGGGCCUUUUGUUUAGCUUUCGCCGGCUUAGGUGGUGGAGU---GGAUACCU
...((.(((((.((.....)).((((((.((((((((.((.(((....((((.....))))....))).)).)))))))).)))))).---))))))). ( -32.20)
>DroEre_CAF1 58696 99 - 1
UGUGGAUGUUCUUCACCUUGAUCUCCACAACUUGGGCGGGAGAACUUGGCGCCUUGCGCUUUGUUUUCGCCGGCUUGGGUGGUGGAGUCUUGGACAGCU
(((.((......)).((..((.((((((.(((..(((((((((((..(((((...)))))..)))))).)).)))..))).))))))))..)))))... ( -44.30)
>DroYak_CAF1 66358 99 - 1
UUUGGAUGUUCUUCACCCUGAUCUCCACAACUUGGGCGGGAGAACUUGGAGCCUUUCGCUUUGUUUUCGCCGGUUUAGGUGGUGGAGUCUUGGAUACCU
...............((..((.((((((.((((((((.((.(((..(..(((.....)))..)..))).)).)))))))).))))))))..))...... ( -34.70)
>DroMoj_CAF1 70016 99 - 1
UCUGAAUGUUUUUCACCUUUAUCUCAACCACCUGAGCGGGCGCUGCCGGCGCUUUGCGUUUGUUUUUCGCCGGCUUCGGCUGAGGCGAGUCCAUCGCCU
..((((.....)))).......((((......))))(((.((..(((((((....((....))....)))))))..)).)))((((((.....)))))) ( -35.10)
>consensus
UUUGGAUGUUCUUCACCUUGAUCUCCACAACUUGGGCGGGAGAACUUGGGGCCUUUCGCUUAGUUUUCGCCGGCUUAGGUGGUGGAGU_UUGGAUACCU
..((((.....)))).((....((((((.(((((((((((((((((..((((.....))))))))))).)).)))))))).))))))....))...... (-24.90 = -25.35 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:05 2006