| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,300,364 – 15,300,457 |
| Length | 93 |
| Max. P | 0.988218 |
| Location | 15,300,364 – 15,300,457 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.82 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -9.01 |
| Energy contribution | -10.53 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.45 |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.988218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15300364 93 - 27905053 UUUCAGUGUCAAUUA--CUGCAAUUUCUUUGGAGUCCCCCCCAUCGCAAAACA-CCAUCGAGUUCAAAUUGGAAGUGCAGUUUUAGCAUUUCU---UUU ....((((..((..(--(((((.((((((((((.((.................-.....)).))))))..)))).)))))).))..))))...---... ( -16.85) >DroSec_CAF1 53132 80 - 1 UUUCAGUGUCAAUUA--CUGCAAUUUCUUUGGAGUCC-C---------------CCAUCGACUUCAAAUUGGAAGUGCAGUUUU-GCAUUUCAUUUUUU ....((((.(((..(--(((((.(((((((((((((.-.---------------.....)))))))))..)))).)))))).))-)))))......... ( -22.90) >DroSim_CAF1 54481 82 - 1 UUUCAGUGUCAAUUA--CUGCAAUUUCUUUGGAGUCCCC---------------CCAUCGACUUCAAAUUGGAAGUGCAGUUUUAGCAUUUCUUUUUUU ....((((..((..(--(((((.(((((((((((((...---------------.....)))))))))..)))).)))))).))..))))......... ( -22.50) >DroEre_CAF1 48988 87 - 1 UUUCAGUGUCAAUUA--CUGCAAUUUCUUUGGAGUCCCC----UCGCCAAACC--CCUCGAGUUCAAAUUGGAAGUGCAGUUUUAGCAUUUCU---U-U ....((((..((..(--(((((.((((((((((.((...----..........--....)).))))))..)))).)))))).))..))))...---.-. ( -17.13) >DroYak_CAF1 55964 90 - 1 UCUCAGUGUCAAUUA--CUGCAAUUUCUUUGGAGUCCCC----UCUCAAAACCCCCCUCAAGUUCAAAUUGGAAGUGCAGUUUUAGCAUUUCU---UUU ....((((..((..(--(((((.(((((((((((....)----)).))))........(((.......))))))))))))).))..))))...---... ( -16.50) >DroAna_CAF1 50320 74 - 1 U-UCAGUGUCAAUUACACUGCAAUUUCUUCGGCUCCCUG----GCU--------CCCUGGCCCUC---------UUGCAGUCUUGGCACUGCU---CUU .-.(((((((((....(((((((...(....)......(----(((--------....))))...---------))))))).)))))))))..---... ( -23.40) >consensus UUUCAGUGUCAAUUA__CUGCAAUUUCUUUGGAGUCCCC____UC_________CCAUCGACUUCAAAUUGGAAGUGCAGUUUUAGCAUUUCU___UUU ....(((((.((.....(((((.((((((((((.((.......................)).))))))..)))).)))))..)).)))))......... ( -9.01 = -10.53 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:03 2006