Locus 5843

Sequence ID 3R_DroMel_CAF1
Location 15,298,158 – 15,298,251
Length 93
Max. P 0.604657
window9562

overview

Window 2

Location 15,298,158 – 15,298,251
Length 93
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 84.66
Mean single sequence MFE -24.42
Consensus MFE -16.30
Energy contribution -18.05
Covariance contribution 1.75
Combinations/Pair 1.04
Mean z-score -1.67
Structure conservation index 0.67
SVM decision value 0.14
SVM RNA-class probability 0.604657
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15298158 93 - 27905053
AGUGGUGCCUCCAUCCGAUCCGAUCCCUCAUUUAUUGUGGGUCAACAGACAGCACCAG-CACGCAUCGGAGUGCACACACCAAUGUGGCACUAA
..(((((((....((((((.(((.(((.((.....)).)))))........((....)-)..).))))))(((....)))......))))))). ( -29.00)
>DroSec_CAF1 50981 91 - 1
AG---UGCCUCGAUCCGAUCCGAUUCCUCAUUUAUUGUGGGUCAACAGACAGCACCAGCCACGCAUCGGAGUGCACAUACCAAUGUGGCACUAA
((---((((..(.((((((.((...((.((.....)).))(((....)))...........)).))))))...)((((....)))))))))).. ( -26.20)
>DroSim_CAF1 51924 91 - 1
AG---UGCCUCGAUCCGAUCCGAUCCCUCAUUUAUUGUGGGUCAACAGACAGCACCAGCCACGCAUCGGAGUGCACACACCAAUGUGGCACUAA
((---((((.((.((((((.(((.(((.((.....)).)))))........((....))...).))))))(((....)))...)).)))))).. ( -27.90)
>DroEre_CAF1 46642 70 - 1
---------U----------CGAUCCCUCAUUUAUUGUGGGUCAACAGACAGCACCAG-CACGCAUCGGAGU----AUACCAAUGUGCCACUAA
---------.----------................(((((((....))).((....)-).(((((.((...----...)).)))))))))... ( -14.60)
>consensus
AG___UGCCUCGAUCCGAUCCGAUCCCUCAUUUAUUGUGGGUCAACAGACAGCACCAG_CACGCAUCGGAGUGCACACACCAAUGUGGCACUAA
..............(((((.((...((.((.....)).))(((....)))...........)).)))))(((((.((((....))))))))).. (-16.30 = -18.05 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:06:02 2006