| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,294,871 – 15,294,970 |
| Length | 99 |
| Max. P | 0.725542 |
| Location | 15,294,871 – 15,294,970 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 97.29 |
| Mean single sequence MFE | -17.80 |
| Consensus MFE | -16.05 |
| Energy contribution | -16.17 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15294871 99 - 27905053 GACUUGUUUUUUGCAAGUGCAAGUAAAUUAAUUGCCUACUUCUAAACGUUUAAAUGUUUCUAGGUGCACACACUUGCUUUAAUUAAUUAUUAACCUAAC .((((((.....))))))((((((........(((..((((..((((((....))))))..)))))))...))))))...................... ( -17.40) >DroSec_CAF1 47468 97 - 1 GACUUGUUUUUUGCAAGUCCAAGUAAAUUAAUUGCCUACUUCUAAACGUUUAAAUGUUUCUAAGUGCA--CACUUGCUUUAAUUAAUUAUUAACCUAAC (((((((.....)))))))......(((((((((...((((..((((((....))))))..))))(((--....)))..)))))))))........... ( -18.60) >DroSim_CAF1 48550 97 - 1 GACUUGUUUUUUGCAAGUGCAAGUAAAUUAAUUGCCUACUUCUAAACGUUUAAAUGUUUCUAAGUGCA--CACUUGCUUUAAUUAAUUAUUAACCUAAC .((((((.....))))))((((((........(((..((((..((((((....))))))..)))))))--.))))))...................... ( -17.40) >consensus GACUUGUUUUUUGCAAGUGCAAGUAAAUUAAUUGCCUACUUCUAAACGUUUAAAUGUUUCUAAGUGCA__CACUUGCUUUAAUUAAUUAUUAACCUAAC .((((((.....))))))((((((........(((..((((..((((((....))))))..)))))))...))))))...................... (-16.05 = -16.17 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:58 2006