Locus 5838

Sequence ID 3R_DroMel_CAF1
Location 15,288,716 – 15,288,832
Length 116
Max. P 0.708418
window9556

overview

Window 6

Location 15,288,716 – 15,288,832
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.60
Mean single sequence MFE -21.24
Consensus MFE -14.78
Energy contribution -14.82
Covariance contribution 0.04
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.70
SVM decision value 0.37
SVM RNA-class probability 0.708418
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15288716 116 - 27905053
CCAAACCUCCCUGAUAAUUUGACUGUUGAAACCUGACAUUCGGUCAACAGUUUUGGUAAGAACUCCAUUCUAAAUCAGGCCCCAAAAGUUUA----AUUUUUUGGCCCAAAAACAAAUCC
.........((((((.....(((((((((...(((.....)))))))))))).(((........)))......))))))..(((((((....----..)))))))............... ( -25.70)
>DroSec_CAF1 41259 115 - 1
CCAAGCCUCCCUAAUAAUUUGACUGUUGAAACCUGACAUUCGGUCAACAGUUUCGGUAAAAACUCCAUUCCAAAUCAGGCCCCAAAAGUUUA----AUUUUUCGGCCCAA-AACAAAUCC
................(((((((((((((...(((.....)))))))))))...((........))....)))))..((((..((((.....----.))))..))))...-......... ( -20.40)
>DroSim_CAF1 42129 115 - 1
CCAAGCCUCCCUAAUAAUUUGACUGUUGAAACCUGACAUUCGGUCAACAGUUUCGGUAAAAACUCCAUUCCAAAUCAGGCCCCAAAAGUUAA----AUUUUUCGGCCCAA-AACAAAUCC
................(((((((((((((...(((.....)))))))))))...((........))....)))))..((((..((((.....----.))))..))))...-......... ( -20.40)
>DroEre_CAF1 37351 118 - 1
CCAAACGCCCCUAAUAUUUGCACAGUUGAAGCCUGACAUACGGUCAAUAGUUUCGGUAAGAACUCUAUUCCAAAUCAGGCCCCAAAAAUUGAAAU-CUUUUUCGGCCCAA-AACAACUCC
......(((................(((..((((((.....((..(((((.(((.....)))..)))))))...))))))..))).....((((.-...)))))))....-......... ( -20.70)
>DroYak_CAF1 40518 119 - 1
GCUAACCUCCCUAAUAAUUUUACAGUUGAAGCCUGUCAAAAGGUCAAUAGUUUCGGAAAGAACUCUAUUCCAAAUCAGGCCCCAAAAAUUAUAACAAUUUUUCGGCCCAA-AACAAAUCC
........................((((..((((......)))))))).((((.((((((....)).))))......((((..(((((((.....))))))).))))..)-)))...... ( -19.00)
>consensus
CCAAACCUCCCUAAUAAUUUGACUGUUGAAACCUGACAUUCGGUCAACAGUUUCGGUAAGAACUCCAUUCCAAAUCAGGCCCCAAAAGUUAA____AUUUUUCGGCCCAA_AACAAAUCC
....................((((((((..(((........)))))))))))..((........))...........((((..((((((.......)))))).))))............. (-14.78 = -14.82 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:56 2006