Locus 5837

Sequence ID 3R_DroMel_CAF1
Location 15,288,374 – 15,288,494
Length 120
Max. P 0.836042
window9555

overview

Window 5

Location 15,288,374 – 15,288,494
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -40.78
Consensus MFE -35.32
Energy contribution -35.08
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.87
SVM decision value 0.73
SVM RNA-class probability 0.836042
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15288374 120 - 27905053
AUAGUUGGCGGUGUGAAUCCCAAAAAGGGAGGUACGGAGCAUCUGGGCAAGCCCGUAUUCAAAUCGGUGGCAGAAGCUGUGGAGAAGGCGAAGCCAGAUGCCACGGUGAUCUUUAUACCA
.........((((((((((((.....))))(((.((..((((((((....(((....(((...((.(..((....))..).))))))))....))))))))..))...))))))))))). ( -43.70)
>DroSec_CAF1 40917 120 - 1
AUAGUUGGCGGUGUGAAUCCCAAGAAGGGCGGUACGGAGCAUCUGGGCAAGCCCGUAUUCAAAUCGGUUGCAGAAGCUGUGGAGAAGGCGAAGCCAGAUGCCACGGUGAUCUUUAUCCCA
....((((.(((....)))))))...(((.(((.((..((((((((....(((....((((...(((((.....)))))))))...)))....))))))))..))...))).....))). ( -37.60)
>DroSim_CAF1 41609 120 - 1
AUAGUUGGCGGUGUGAAUCCCAAGAAGGGCGGUACGGAGCAUCUGGGUAAGCCCGUAUUCAAAUCGGUGGCAGAAGCUGUGGAGAAGGCGAAGCCAGAUGCCACGGUGAUCUUUAUCCCA
....((((.(((....)))))))...(((.(((.((..((((((((.(..(((....(((...((.(..((....))..).))))))))..).))))))))..))...))).....))). ( -38.80)
>DroEre_CAF1 37009 120 - 1
AUAGUUGGCGGCGUGAAUCCCAAAAAGGGCGGUACGGAGCAUCUGGGCAAGCCGGUUUUCAAAUCAGUGGCAGAAGCUGUGGAGAAGGCGAAGCCAGAUGCCACCGUGAUCUUCAUACCA
.........((..((((.(((.....))).(((((((.((((((((....(((..((((((...((((.......)))))))))).)))....))))))))..)))).)))))))..)). ( -43.00)
>DroYak_CAF1 40179 120 - 1
AUAGUUGGCGGUGUGAAUCCCAAAAAGGGCGGAACGGAGCAUCUGGGUAAGCCGGUUUUCAAAUCGGUGGCAGAAGCUGCGGAGAAGGUGAAGCCGGAUGCCACGGUGAUCUUUAUACCA
.........(((((((..(((.....)))......(((.((((..((((..(((((((((...((.(..((....))..).))....).)))))))).))))..)))).)))))))))). ( -40.80)
>consensus
AUAGUUGGCGGUGUGAAUCCCAAAAAGGGCGGUACGGAGCAUCUGGGCAAGCCCGUAUUCAAAUCGGUGGCAGAAGCUGUGGAGAAGGCGAAGCCAGAUGCCACGGUGAUCUUUAUACCA
.........((.(((((.(((.....))).(((.((..((((((((....(((....(((...((.(..((....))..).))))))))....))))))))..))...)))))))).)). (-35.32 = -35.08 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:55 2006