Locus 5835

Sequence ID 3R_DroMel_CAF1
Location 15,287,695 – 15,287,814
Length 119
Max. P 0.751380
window9552

overview

Window 2

Location 15,287,695 – 15,287,814
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 94.79
Mean single sequence MFE -50.16
Consensus MFE -45.28
Energy contribution -46.12
Covariance contribution 0.84
Combinations/Pair 1.07
Mean z-score -1.26
Structure conservation index 0.90
SVM decision value 0.48
SVM RNA-class probability 0.751380
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15287695 119 + 27905053
UGGGCACCAGUUUCAGGCGGAUCAUUUCCUCGAGGAGCGUGGAGCCCAGGUGGCAGGGAUUGGCGGUCAUACGGACUCCCGCUUUCUCCAGGGCGGCCACCUUGUCCUUGGCCGCUCCC
(((((.((((((((..(.(((.....))).)..))))).))).)))))((((((((((((.((.((((....((....))((((......)))))))).))..)))))).))))))... ( -53.30)
>DroSec_CAF1 40238 119 + 1
UGGGCACCAGUUUAAGGCGGAUCAUUUCCUCGAGGAGCGUGGAGCCCAGGUGGCAUGGAUUGGCGGUCAUGCGGACUCCCGCUUUCUCCAAGGCGGCCACCUUGUCCUUGGCCGCUCCC
(((((.(((((((..((.(((.....)))))...)))).))).)))))((((((..((((.((.((((....((....))(((((....))))))))).))..))))...))))))... ( -50.60)
>DroSim_CAF1 40930 119 + 1
UGGGCACCAGUUUAAGGCGGAUCAUUUCCUCGAGGAGCGUGGAGCCCAGGUGGCAUGGAUUGGCGGUCAUGCGGACUCCCGCUUUCUCCAAGGCGGCCACCUUGUCCUUGGCCGCUCCC
(((((.(((((((..((.(((.....)))))...)))).))).)))))((((((..((((.((.((((....((....))(((((....))))))))).))..))))...))))))... ( -50.60)
>DroEre_CAF1 36330 119 + 1
UGGGCACCAGUUUCAAACGGAUCAUUUCCUCCAGGAGCGUGGAGCCCAGGUGGCAGGGAUUGGCGGUCAUGCGAACUCCCACCUUCUCCAAGGCGGCCACCUUGUCCUUGGCCGCUCCC
(((((.((((((((....(((.....)))....))))).))).)))))((((((((((((((((.(((.((.(((........)))..)).))).))))....)))))).))))))... ( -47.80)
>DroYak_CAF1 39500 119 + 1
UGGGCACCAGUUUCAGACGGAUCAUUUCCUCGAGAAGCGAGGAGCCCAGGUGGCAGGGAUUGACGGUCAUGCGAACUCCCGCCUUCUCCAAGGCGGCCACCUUGUCCUUGGCCGCUCCC
(((((.((.(((((.((.(((.....)))))..)))))..)).)))))((((((((((((....((((....))....(((((((....)))))))...))..)))))).))))))... ( -48.50)
>consensus
UGGGCACCAGUUUCAGGCGGAUCAUUUCCUCGAGGAGCGUGGAGCCCAGGUGGCAGGGAUUGGCGGUCAUGCGGACUCCCGCUUUCUCCAAGGCGGCCACCUUGUCCUUGGCCGCUCCC
(((((.((((((((....(((.....)))....))))).))).)))))((((((((((((.((.((((....(......)(((((....))))))))).))..)))))).))))))... (-45.28 = -46.12 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:52 2006