Locus 5833

Sequence ID 3R_DroMel_CAF1
Location 15,283,041 – 15,283,133
Length 92
Max. P 0.972616
window9548

overview

Window 8

Location 15,283,041 – 15,283,133
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 84.14
Mean single sequence MFE -15.51
Consensus MFE -14.54
Energy contribution -14.40
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -2.18
Structure conservation index 0.94
SVM decision value 1.70
SVM RNA-class probability 0.972616
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15283041 92 + 27905053
AUCCUAAUUUCUAUUCGUAUUUGGGCACGCCCUAUGAUAAUUACAAUUAUUAAAUGCGAAUU---ACACCGG-A-----ACACACGUACCUACAAUCAUCG
.(((........(((((((((((((....)))...((((((....)))))))))))))))).---.....))-)-----...................... ( -16.84)
>DroPse_CAF1 47671 89 + 1
GUCCUAAUUUCUAUUCGUAUUUGGGUACGCCCUAUGAUAAUUACAAUUAUUAAAUGCGAAUGCACUCACCGA-A-----ACAC-----CCAACAACCACU-
...........((((((((((((((....)))...((((((....)))))))))))))))))..........-.-----....-----............- ( -15.30)
>DroSim_CAF1 36283 92 + 1
AUCCUAAUUUCUAUUCGUAUUUGGGCGCGCCCUACGAUAAUUACAAUUAUUAAAUGCGAAUU---ACACCGG-A-----ACACACGUACCUACACUCAUCU
.(((........(((((((((((((....)))...((((((....)))))))))))))))).---.....))-)-----...................... ( -16.94)
>DroYak_CAF1 34832 92 + 1
AUCCUAAUUUCUAUUCGUAUUUGGGCACGCCCUACGAUAAUUACAAUUAUUAAAUGCGAAUU---UCACCGA-A-----ACACACGUACCUACAUUCAUCG
............(((((((((((((....)))...((((((....)))))))))))))))).---.......-.-----...................... ( -14.30)
>DroAna_CAF1 37309 98 + 1
AUCCUAAUUUCUAUUCGUAUUUGGGUACGCCCUAUGAUAAUUACAAUUAUUGAAUGCGAAUU---ACACUCCCAACCUCCCACACAUACCUACAAUCAUCG
............(((((((((((((....)))...((((((....)))))))))))))))).---.................................... ( -14.40)
>DroPer_CAF1 46642 89 + 1
GUCCUAAUUUCUAUUCGUAUUUGGGUACGCCCUAUGAUAAUUACAAUUAUUAAAUGCGAAUGCACUCACCGA-A-----ACAC-----CCAACAACCACU-
...........((((((((((((((....)))...((((((....)))))))))))))))))..........-.-----....-----............- ( -15.30)
>consensus
AUCCUAAUUUCUAUUCGUAUUUGGGCACGCCCUAUGAUAAUUACAAUUAUUAAAUGCGAAUU___ACACCGA_A_____ACACACGUACCUACAAUCAUCG
............(((((((((((((....)))...((((((....))))))))))))))))........................................ (-14.54 = -14.40 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:48 2006