| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,281,923 – 15,282,025 |
| Length | 102 |
| Max. P | 0.755924 |
| Location | 15,281,923 – 15,282,025 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -19.23 |
| Consensus MFE | -13.22 |
| Energy contribution | -12.67 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.755924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15281923 102 + 27905053 AUUGAAUCUUAAGUAUAUGAUUAGCAUAUCGACUUGAACUAGUACUUAGACACCAAAAUGGGUGUAAA--AGUGUAUCAUAUGAGGAUUGUACCUAUGAAUUAA ....((((((...((((((((..((......(((......)))((((..(((((......)))))..)--)))))))))))))))))))............... ( -19.40) >DroSec_CAF1 34484 87 + 1 AUUGAAUCUAAGGUAUACGAUU---------------ACUAGUACUUAGACACCAAAAUAGGUGUACA--AGUGUACCUUUUGAGGAUUGUACCUAUGAAUUAA .((((.((..(((((((.....---------------.....(((((..(((((......)))))..)--))))..(((....)))..)))))))..)).)))) ( -21.00) >DroSim_CAF1 35174 89 + 1 ACUCAAUCUGAAGUAUACAAUU---------------ACUAGUACUUAGACACCAAAAUAGGUGUAAAAUAGUGUACCUUUUGAGGAUUGUACCUAUGAAUUAC ...((((((..((((......)---------------))).(((((((.(((((......)))))....))).)))).......)))))).............. ( -17.30) >consensus AUUGAAUCUAAAGUAUACGAUU_______________ACUAGUACUUAGACACCAAAAUAGGUGUAAA__AGUGUACCUUUUGAGGAUUGUACCUAUGAAUUAA ....((((((((((((((....................((((...))))(((((......)))))......))))).))))...)))))............... (-13.22 = -12.67 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:47 2006