| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,278,828 – 15,278,926 |
| Length | 98 |
| Max. P | 0.725420 |
| Location | 15,278,828 – 15,278,926 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.25 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -7.37 |
| Energy contribution | -8.68 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15278828 98 - 27905053 GCCACUUGCGGGAAUUCUUUCACUUCGAGGCACUUGCUCAGCACAAAGGAG-----UAUAUAU------------U-UUCAGCUCGUUUUCAUGCUCCUGUUGAAUGAGUUUUUAC (((..(((.(((((....))).)).))))))((((..((((((....((((-----(((....------------.-..............)))))))))))))..))))...... ( -22.61) >DroSec_CAF1 31341 99 - 1 GCCACUUGCGGGAAUUCUUUCACUUCGAGGCACUUGCUCAGCACAAAGGAG-----CAUAUAU------------UUUUCAGUUCGUUUUCAUGCUCCUGUUGAAUAAGUUUCUAC (((..(((.(((((....))).)).))))))(((((.((((((....((((-----(((....------------................))))))))))))).)))))...... ( -24.55) >DroSim_CAF1 32060 94 - 1 GCCACUUGCGGGAAUUCUUUCACUUCGAGGCACUUGCUCAGCACAAAGGAG-----CAUAUAU------------UUUUCAGUUCGUUUUCAUGCUCCUGUUGAAUAAGUU----- (((..(((.(((((....))).)).))))))(((((.((((((....((((-----(((....------------................))))))))))))).))))).----- ( -24.55) >DroEre_CAF1 27656 96 - 1 GCCACUUGCGGGAAUUCUUUCCCUUCGAGGCACUUGCUCAGCACAAAGGAG-----CAUG--------------UAUUCCAUUUCGUUUUCAUGCUCCCGCUGAAUAAGUU-UUCC (((..(((.(((((....)))))..))))))(((((.(((((.....((((-----((((--------------....(......)....)))))))).))))).))))).-.... ( -32.50) >DroYak_CAF1 30606 111 - 1 GCCACUCGCAGGAAUUCUUUCACUUCGAGCCACUUGCUCCGAAUAAAGGAG-----CAUAUAUAUAUGUAUGUAUAUUCCAUUACAUUUUCAUGCUCCUGGUGAAUACGUUUUUCC ((.....)).((((....((((((..((((....((((((.......))))-----)).......(((.(((((........)))))...)))))))..)))))).......)))) ( -29.20) >DroAna_CAF1 33722 98 - 1 ------UGGGGAGGUACUUCAAUUUUGGAGAAAUAGCUGAGCAGAAAGAAUAUACAUAUAUAU------------UUCCCAUUUCGCUUUCAUGCUCCUGUUGAAUACGCCUUUCU ------.((..((((..((((((...((((........((((.(((((((((((....)))))------------))....)))))))).....)))).))))))...))))..)) ( -26.32) >consensus GCCACUUGCGGGAAUUCUUUCACUUCGAGGCACUUGCUCAGCACAAAGGAG_____CAUAUAU____________UUUCCAGUUCGUUUUCAUGCUCCUGUUGAAUAAGUUUUUCC ....((((.(((((....))).)).))))..(((((.(((((....(((((...........................................)))))))))).)))))...... ( -7.37 = -8.68 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:47 2006