Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,278,234 – 15,278,327 |
Length | 93 |
Max. P | 0.779259 |
Location | 15,278,234 – 15,278,327 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 74.63 |
Mean single sequence MFE | -16.21 |
Consensus MFE | -2.33 |
Energy contribution | -2.49 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.23 |
Mean z-score | -1.66 |
Structure conservation index | 0.14 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.779259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15278234 93 + 27905053 AACUGGGAAUUAAGUAAUAAGGAUUAGUUAAAAAAAAAAGAGUUAGAGUUGCAGAGAAA--GGAA-AGCCCUGGCAAAUGCUUU--UUUACUCAGAUA ..(((((..((((.((((....)))).))))....((((((((.....((((......(--((..-...))).))))..)))))--))).)))))... ( -19.70) >DroSec_CAF1 30762 94 + 1 AACUAGGAAUUAAGUAAUUAAGAUUAGUUUAAA--AAAGGAGUUAGAGGCGCAGAGAAA--GGAAAAACACUGGCAAAGGCUUUUUUUUAUUCAGAUA ((((((...((((....))))..))))))..((--(((((((((....((.(((.....--.........)))))...)))))))))))......... ( -15.94) >DroSim_CAF1 31473 94 + 1 AACUAGGAAUUAAGUAAUUAAGAUUAGUUUAAA--AAAAGAGUUACAGGGGCAGAGAAA--GGAAAAACACUGGCGAAGGCUUUUUUUUACUCAGAUA ((((((...((((....))))..))))))....--....((((...((((((...(..(--(........))..)....))))))....))))..... ( -16.30) >DroEre_CAF1 27062 87 + 1 AACUAGGAAUUAUGCAAUUAAGAUUAGUUUAGA--AGAGG---------GGCAGGAAAAUGGAGAAAAACCUGGCCAAGGGUUUAUUUUCGUCAGCUA ((((((...(((......)))..))))))....--.....---------(((..((...((((((.((((((......)))))).)))))))).))). ( -15.00) >DroYak_CAF1 30012 84 + 1 AGCUAGGAACCAUGUAAUUUAGAUUAGUUUAGA--AAAAAA--------AACAGAAAAA--GAAAAUGCCCUGGCAAAGGGUUU--UUUCGUCAGAUA .....................(((..((((...--.....)--------))).......--(((((.(((((.....))))).)--)))))))..... ( -14.10) >consensus AACUAGGAAUUAAGUAAUUAAGAUUAGUUUAAA__AAAAGAGUUA_AG_GGCAGAGAAA__GGAAAAACCCUGGCAAAGGCUUU_UUUUACUCAGAUA ((((((...(((......)))..)))))).........................................((((.................))))... ( -2.33 = -2.49 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:45 2006