| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,277,412 – 15,277,506 |
| Length | 94 |
| Max. P | 0.556149 |
| Location | 15,277,412 – 15,277,506 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.15 |
| Mean single sequence MFE | -14.32 |
| Consensus MFE | -0.06 |
| Energy contribution | 0.26 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.00 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.556149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15277412 94 + 27905053 AAAAAUAUAUUAUUUAAGCCACUCAUGUUCUCAUUCAGAACCAUCAUUUGCUGGCCGAAA-AAGG----------GAGAGAAAAGAGUUAAAUUGCAAUAAAAAU .........((((((((...((((...(((((........(((.(....).)))((....-..))----------..)))))..))))....))).))))).... ( -14.10) >DroSec_CAF1 29905 82 + 1 AAAAAUAUAUUAUUUAAGCCACUCAUGCUCUCAUUCAGAAUCAUCAUUUGCUGGACGAA-----------------------AAGAGUUAAAUUGCAAUAAAAAU .................((.......((((((.(((((((.......)).))))).)).-----------------------..))))......))......... ( -8.32) >DroSim_CAF1 30603 95 + 1 AAAAAUAUAUUAUUUAAGCCACUCAUGCUCUCAUUCAGAAUCAUCAUUUGCUGGACGAAAAAAAG----------GAGAGAAAAGAGUUAAAUUGCAAUAAAAAU .........((((((((...((((...(((((.(((((((.......)).)))))(........)----------)))))....))))....))).))))).... ( -12.80) >DroEre_CAF1 26391 92 + 1 AAAAAUAUAUUUUUUAAGCCACU------------CACAGUCAUCAUUUGCUGACCGAA-AAGGGCAUGCAAAUACAGAAAAAAGAGUUAAAUUGCAAUAAAAAU ........((((((...((.(((------------(....((...((((((((.((...-..)).)).))))))...)).....))))......))...)))))) ( -12.60) >DroYak_CAF1 29244 103 + 1 AAAAAU--AUUUUUAAAGCCACUUAUGCCCUUGGCCAAAGUCAUCAUUUGAUGGCCGAAAAAGGGCAUGCAAAUACAGAAAAAAGAGUUAAAUUGCAAUAAAGAU ......--(((((((.........(((((((((((((...(((.....))))))))....))))))))((((..((..........))....))))..))))))) ( -23.80) >consensus AAAAAUAUAUUAUUUAAGCCACUCAUGCUCUCAUUCAGAAUCAUCAUUUGCUGGCCGAAAAAAGG__________CAGAAAAAAGAGUUAAAUUGCAAUAAAAAU ........................................(((.(....).)))................................................... ( -0.06 = 0.26 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:44 2006