Locus 5828

Sequence ID 3R_DroMel_CAF1
Location 15,254,585 – 15,254,682
Length 97
Max. P 0.999587
window9543

overview

Window 3

Location 15,254,585 – 15,254,682
Length 97
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 94.85
Mean single sequence MFE -18.90
Consensus MFE -17.77
Energy contribution -17.93
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.94
SVM decision value 3.75
SVM RNA-class probability 0.999587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15254585 97 + 27905053
UGUCCCCUAAGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAGGACCACAGAAAAACACCCACAGACA
.(((......(((((((....(((((...........)))))...)))))))........((.........))....................))). ( -18.80)
>DroSec_CAF1 16174 97 + 1
UGUCCCCUAAGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAUGACCACAGAAAAACACCCACAGACA
.(((......(((((((....(((((...........)))))...))))))).........(((......)))....................))). ( -19.40)
>DroSim_CAF1 16285 97 + 1
UGUCCCCUAAGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAGGACCACAGAAAAACACCCACAGACA
.(((......(((((((....(((((...........)))))...)))))))........((.........))....................))). ( -18.80)
>DroEre_CAF1 13650 97 + 1
UGUCCCCUAAGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAGGACCACAGAAAAACACCCACACAGA
.((((.....(((((((....(((((...........)))))...)))))))...((......))......))))...................... ( -18.70)
>DroYak_CAF1 12582 97 + 1
UGUCCCCUAAGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAGGACCAUAGAAAAACACCCACGGAGA
..(((.....(((((((....(((((...........)))))...)))))))........((.........))...................))).. ( -18.80)
>DroAna_CAF1 17355 96 + 1
UGUCCCCUAGGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAGGACUACACAAAAACUGCCCUCCAC-
.((((.....(((((((....(((((...........)))))...)))))))...((......))......)))).....................- ( -18.90)
>consensus
UGUCCCCUAAGGCCAAUCAAUGUGGUAUCAUUACAAAGCCAUUAAGUUGGCCAAUCAAAACCAUGCAAAAAGGACCACAGAAAAACACCCACAGACA
.((((.....(((((((....(((((...........)))))...)))))))...((......))......))))...................... (-17.77 = -17.93 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:44 2006