Locus 5827

Sequence ID 3R_DroMel_CAF1
Location 15,251,699 – 15,251,789
Length 90
Max. P 0.830644
window9542

overview

Window 2

Location 15,251,699 – 15,251,789
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 92.44
Mean single sequence MFE -19.14
Consensus MFE -16.02
Energy contribution -16.14
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.84
SVM decision value 0.71
SVM RNA-class probability 0.830644
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15251699 90 + 27905053
AUAUCCGUUUCCUGUUGACAAAUGUCACGGGAACCGAAGAGUCAUCUAAUAACAUUUAUUCUAAUGGAAAAGGCGAACGGAAAAAAAUCG
...((((((((((((.(((....))))))))).((..(((....))).....((((......)))).....))..))))))......... ( -21.50)
>DroSec_CAF1 13266 90 + 1
AUAUCCGUUUCCUGUUGACAAAUGUCACGGGAACCGAAGAGUCAUCUAAUAACAUUUAUUCUAAUGGAAAAGGCGAACGGAAAAAAAUCG
...((((((((((((.(((....))))))))).((..(((....))).....((((......)))).....))..))))))......... ( -21.50)
>DroSim_CAF1 13333 90 + 1
AUAUCCGUUUCCUGUUGACAAAUGUCACGGGAACCGAAGAGUCAUCUAAUAACAUUUAUUCUAAUGGAAAAGGCGAACGGAAGAAAAUCG
...((((((((((((.(((....))))))))).((..(((....))).....((((......)))).....))..))))))......... ( -21.50)
>DroEre_CAF1 10832 89 + 1
AUAUCCGUUUCCUGUUGACAAAUGCCACGGGAACCGAAAAGUCAUCUUCUUACAUUAAUUCUGAUGGAAAAGUCGAAAGGAA-AAAAUCG
.......((((((.(((((.....((((((((......(((.......))).......))))).)))....))))).)))))-)...... ( -17.92)
>DroYak_CAF1 9657 89 + 1
AUAUCCGUUUCCUGUUGACAAAUGCCACGGGACCCGAAAAGUCAUCUUAUAAUAUUUAUUCUAAUAGAAAAGGCGAAAGGAA-AAAAUUG
...((((..((((((.(.(....)).))))))..)......((..(((....((((......))))...)))..))..))).-....... ( -13.30)
>consensus
AUAUCCGUUUCCUGUUGACAAAUGUCACGGGAACCGAAGAGUCAUCUAAUAACAUUUAUUCUAAUGGAAAAGGCGAACGGAA_AAAAUCG
...((((.(((((((.(((....)))))))))).)......((..((.....((((......))))....))..))..)))......... (-16.02 = -16.14 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:43 2006