Locus 5825

Sequence ID 3R_DroMel_CAF1
Location 15,238,116 – 15,238,236
Length 120
Max. P 0.917587
window9539

overview

Window 9

Location 15,238,116 – 15,238,236
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.30
Mean single sequence MFE -48.62
Consensus MFE -44.91
Energy contribution -44.71
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 1.12
SVM RNA-class probability 0.917587
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15238116 120 - 27905053
CCGUGCUCUCAAUGUCACUCGCAGGGCUCGAGCACCUGCUCUGGGCCAUAUUUCGUUGGUUGCGUUGAUGGCUUCUGGCUGGUGAGCCAGGAGCGGUUCUCAACUCGCCCACAUCGCGGG
((((((..((((((..........(((((((((....)))).)))))......))))))..))...((((((((((((((....))))))))))(((.........)))..)))))))). ( -49.89)
>DroSec_CAF1 5320 119 - 1
CCGUGCUCUCAAUGUCACUCGCAGGGCUCGAGCACCUGCUCUGGGCCAUAUUUCGUUGGUUGCGUUGAUGGUUUCUGGCUGGUG-GCCAGGAGCGGUUCUCAACUCGGAGACAUUGCGGG
.....(((.(((((((....(((((((....)).)))))(((((((((........)))))..((((((.(((((((((.....-))))))))).)...))))).))))))))))).))) ( -49.80)
>DroSim_CAF1 5351 119 - 1
CCGUGCUCUCAAUGUCACUCGCAGGGCUCGAGCACCUGCUCUGGGCCAUAUUUCGUUGGUUGCGUUGAUGGUUUCUGGCUGGUG-GCCAGGAGCGGUUCUCAACUCGGAGACAUUGCGGG
.....(((.(((((((....(((((((....)).)))))(((((((((........)))))..((((((.(((((((((.....-))))))))).)...))))).))))))))))).))) ( -49.80)
>DroEre_CAF1 3160 119 - 1
CCGUGCUCUCAAUGUCACUCGCAGGGCUCGAGCACCUGCUCUGGGCCAUAUUUCCUUGGUUGCGUUGAUGGCUUCUGGCUGGUG-GCCAGGAGCGGUUCUCAUCUCACCCACUCCGCGGG
(((((...(((((((.....(((((((....)).)))))....(((((........))))))))))))..(((((((((.....-)))))))))....................))))). ( -46.10)
>DroYak_CAF1 3150 119 - 1
CCGUGCUCUCAAUGUCACUUGCAGGGCUCGGGCACCUGCUCUGGGCCAUAUUUCGUUGGUUGCGUUGAUGGCUUCUGGCUGGUG-GCCAGGAGCGGUUCUCAUCUCACCCACACCGCGGG
(((((...(((((((.(((.((..(((((((((....)).))))))).......)).))).)))))))..(((((((((.....-)))))))))....................))))). ( -47.50)
>consensus
CCGUGCUCUCAAUGUCACUCGCAGGGCUCGAGCACCUGCUCUGGGCCAUAUUUCGUUGGUUGCGUUGAUGGCUUCUGGCUGGUG_GCCAGGAGCGGUUCUCAACUCGCCCACAUCGCGGG
((((((..((((((..........(((((((((....)))).)))))......))))))..))(..(((.(((((((((......))))))))).)))..)..............)))). (-44.91 = -44.71 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:40 2006