Locus 5822

Sequence ID 3R_DroMel_CAF1
Location 15,236,724 – 15,236,840
Length 116
Max. P 0.619214
window9535

overview

Window 5

Location 15,236,724 – 15,236,840
Length 116
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 86.75
Mean single sequence MFE -26.50
Consensus MFE -18.35
Energy contribution -19.03
Covariance contribution 0.68
Combinations/Pair 1.15
Mean z-score -1.88
Structure conservation index 0.69
SVM decision value 0.17
SVM RNA-class probability 0.619214
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15236724 116 - 27905053
GUUUGAAAUACCUUGAGACUUUACUCCAUGUCAAGAAAGUUUUCACAAACACCACCUAUAUAAGUGGAGGCGUAGGUGUCCACUCAAUGGGUUCCUUAAUCAACCAAUCAAGCCAA
((((((........((((((((.((........))))))))))..........((((((...((((((.((....)).))))))..))))))...............))))))... ( -26.60)
>DroSec_CAF1 4030 116 - 1
GUUUGAGACACCUUAAGACUUCACCCAAUGUCAAGAAAGUUUUCACAAACACCACCUACAUAAGUGGAGGCGUAGGUGUCCACUCAAUGGGUUCCUUAAUCAACCAAUCAAGCCAA
(((((((((((((...(.((((((...((((.......((((....)))).......))))..)))))).)..))))))).........((((........))))..))))))... ( -28.14)
>DroSim_CAF1 4056 116 - 1
GUUUGAGACACCUUAAGACUUCACCCAAUGUCAAGAAAGUUUUCACAAACACCACCUACAUAAGUGGAGGCGUAGGUGUCCACUCAAUGGGUUCCUUAAUCAACCAAUCAAGCCAA
(((((((((((((...(.((((((...((((.......((((....)))).......))))..)))))).)..))))))).........((((........))))..))))))... ( -28.14)
>DroEre_CAF1 1786 111 - 1
GUUUGGGGCAACUU-UGCCUGCACUUCACGUCAAGAAAGUUUCCACAAGCACCACC----UAAGUGGAGGCGUAGAUGUCCACUCAACGGAUUCCCUAAUCAACCAAUCAAGCCAA
((((((((((.((.-(((((.(((((..(.....)...((((....))))......----.))))).))))).)).))))).......((....))............)))))... ( -27.10)
>DroYak_CAF1 1696 111 - 1
GUUUGGGACAACUA-UGACUUUACUUCCAGUCAAGAAAUUUUUCACAAACACCACA----UAAGUGGAGGCGUAGGUGUCCACUCAAUGAAUCCCUUAAUCAACCAAUCAAGCCAA
((((((((((.(((-((.(((.((.....)).)))................((((.----...))))...))))).)))))......(((.........)))......)))))... ( -22.50)
>consensus
GUUUGAGACACCUU_AGACUUCACUCCAUGUCAAGAAAGUUUUCACAAACACCACCUA_AUAAGUGGAGGCGUAGGUGUCCACUCAAUGGGUUCCUUAAUCAACCAAUCAAGCCAA
(((((((((((((...(((..........)))......((((((((.................))))))))..))))))).......(((.............))).))))))... (-18.35 = -19.03 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:36 2006