Locus 5821

Sequence ID 3R_DroMel_CAF1
Location 15,232,749 – 15,232,854
Length 105
Max. P 0.644716
window9534

overview

Window 4

Location 15,232,749 – 15,232,854
Length 105
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -34.20
Consensus MFE -25.86
Energy contribution -25.68
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -1.59
Structure conservation index 0.76
SVM decision value 0.23
SVM RNA-class probability 0.644716
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15232749 105 - 27905053
AUGGCCUCCUGUUGCUC--GAGACAUAACAGGUGGCAAGGCUGGGAGAGAUAGCUUUAAUGGAGCUGUUGAUUGCUCACCGAAACUGGAGCCCAACGGUGGUAGCAA
...(((.(((((((...--......))))))).)))...((((.((..((((((((.....))))))))..)).)((((((....(((...))).)))))).))).. ( -35.00)
>DroEre_CAF1 159022 105 - 1
AUGGCCUCCUGUUGCUC--GAGACAUAACAGGUGGCAAGGCUGGGAGAGAUAGCUUUAAUGGAGCUGUUGACUGCUCACCCAAACUGGAGCCCCCAAGUGGGGACAA
...(((.(((((((...--......))))))).))).((..((((.((((((((((.....)))))))......))).))))..))...(.((((....)))).).. ( -38.40)
>DroYak_CAF1 171015 105 - 1
AUGGCCUCCUGUUGCUC--GAGACAUAACAGGUGGCAAGGCUAGGAGAGAUAGCUUUAAUGGAGCUGUUGAUUUCUCACCGAAACUAGAGCCUCAAAGUAGAGACAA
...(((.(((((((...--......))))))).))).(((((...((.((((((((.....))))))))..((((.....))))))..))))).............. ( -30.80)
>DroAna_CAF1 160364 106 - 1
AUGGCCUCCUGUUGCUCCUGAGACAUAACAGGUGGCAAGGCUCCGAGAGAUAGCUUAAAUGGAGCUGUUGAUGGCUUACCGAAAUACAAAGC-CAAAGAUGCGACGU
...(((.(((((((.((....))..))))))).)))..(((((((.(((....)))...)))))))((((.((((((...........))))-))......)))).. ( -32.60)
>consensus
AUGGCCUCCUGUUGCUC__GAGACAUAACAGGUGGCAAGGCUGGGAGAGAUAGCUUUAAUGGAGCUGUUGAUUGCUCACCGAAACUGGAGCCCCAAAGUGGAGACAA
...(((.(((((((((....))...))))))).)))..((....(((.((((((((.....)))))))).....))).))........................... (-25.86 = -25.68 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:35 2006