Locus 582

Sequence ID 3R_DroMel_CAF1
Location 2,171,980 – 2,172,097
Length 117
Max. P 0.910739
window928

overview

Window 8

Location 2,171,980 – 2,172,097
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 74.67
Mean single sequence MFE -39.93
Consensus MFE -20.33
Energy contribution -21.08
Covariance contribution 0.76
Combinations/Pair 1.39
Mean z-score -2.04
Structure conservation index 0.51
SVM decision value 1.07
SVM RNA-class probability 0.910739
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2171980 117 - 27905053
UCUAGCUUUUUCAUCGCAAGUUGCAGUGGUGGCUGCCGAUGAGGCAUGGGCUCCACAAAACUCACUGCCCUUGUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUAACACCCAGUA
....(((............(((((((.(((((((((.((..(((((((((..........)))).)).)))..)).)))))))))))))))).((((.....)))).......))). ( -41.20)
>DroSec_CAF1 314115 117 - 1
UCCAGAUUUGUCAUCAGAAUUUGCAGUGGUGGCUGUCGUUGGGGCAUGGGCUCCACAAAACUCACUGCCCUUAUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGCACCCAGUA
......((((....))))...(((((.(((((((((....((((((((((..........)))).)))))).....))))))))))))))((.((((.....)))).))........ ( -42.40)
>DroSim_CAF1 330579 117 - 1
UGCAGAUUUGUCAUCAGAAGUUGCAGUGGUGGCUGUCGUUGGGGCAUGGGCUCCACAAAACUCACUGCCCUUAUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGCACCCAGUA
........((((.......(((((((.(((((((((....((((((((((..........)))).)))))).....)))))))))))))))).((((.....))))))))....... ( -44.10)
>DroWil_CAF1 326798 102 - 1
CACG---UUGUCUUC------------AGUCACUGUAGCGAGAGCGUGGGCGCCACAAAACAAACUCCCCUUAUUGGGUGUCAUCUUACAGUUGCGCUUCUUUCGUGGCACCCAGUA
((((---((.((..(------------((...)))....)).)))))).......................(((((((((((((.....((.....))......))))))))))))) ( -27.80)
>DroYak_CAF1 318615 117 - 1
UCCAGACUUUUCAUUGGAAGUUGAUGUGGUGGCUGUCGGUGGAGCAUGGGCUCCACAAAACUGACUGUCCUUGUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGUACCCAGUA
....((((((......))))))..((.(((((((((..(((((((....))))))).....(((((((........)))))))....))))).((((.....))))..))))))... ( -41.40)
>DroAna_CAF1 287360 105 - 1
GCCAGAGUUAUCAUCCAAUAU------AGAGGCU------GGCGCAUGGGCACCGCAAAAAGUGCUGCCUUUGUUGGCAGUCAUUUUGCAGCGACGUUUCUUGCGCGGUACCCAAUA
(((((..((((........))------))...))------)))...((((.(((((..(((((((((((......))))).))))))((((.((....))))))))))).))))... ( -42.70)
>consensus
UCCAGAUUUGUCAUCAGAAGUUGCAGUGGUGGCUGUCGUUGGGGCAUGGGCUCCACAAAACUCACUGCCCUUAUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGCACCCAGUA
...........................(((((((((....(((((....))))).........(((((........)))))......))))).((((.....))))..))))..... (-20.33 = -21.08 +   0.76) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:40 2006