Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,171,980 – 2,172,097 |
Length | 117 |
Max. P | 0.910739 |
Location | 2,171,980 – 2,172,097 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 74.67 |
Mean single sequence MFE | -39.93 |
Consensus MFE | -20.33 |
Energy contribution | -21.08 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.39 |
Mean z-score | -2.04 |
Structure conservation index | 0.51 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2171980 117 - 27905053 UCUAGCUUUUUCAUCGCAAGUUGCAGUGGUGGCUGCCGAUGAGGCAUGGGCUCCACAAAACUCACUGCCCUUGUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUAACACCCAGUA ....(((............(((((((.(((((((((.((..(((((((((..........)))).)).)))..)).)))))))))))))))).((((.....)))).......))). ( -41.20) >DroSec_CAF1 314115 117 - 1 UCCAGAUUUGUCAUCAGAAUUUGCAGUGGUGGCUGUCGUUGGGGCAUGGGCUCCACAAAACUCACUGCCCUUAUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGCACCCAGUA ......((((....))))...(((((.(((((((((....((((((((((..........)))).)))))).....))))))))))))))((.((((.....)))).))........ ( -42.40) >DroSim_CAF1 330579 117 - 1 UGCAGAUUUGUCAUCAGAAGUUGCAGUGGUGGCUGUCGUUGGGGCAUGGGCUCCACAAAACUCACUGCCCUUAUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGCACCCAGUA ........((((.......(((((((.(((((((((....((((((((((..........)))).)))))).....)))))))))))))))).((((.....))))))))....... ( -44.10) >DroWil_CAF1 326798 102 - 1 CACG---UUGUCUUC------------AGUCACUGUAGCGAGAGCGUGGGCGCCACAAAACAAACUCCCCUUAUUGGGUGUCAUCUUACAGUUGCGCUUCUUUCGUGGCACCCAGUA ((((---((.((..(------------((...)))....)).)))))).......................(((((((((((((.....((.....))......))))))))))))) ( -27.80) >DroYak_CAF1 318615 117 - 1 UCCAGACUUUUCAUUGGAAGUUGAUGUGGUGGCUGUCGGUGGAGCAUGGGCUCCACAAAACUGACUGUCCUUGUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGUACCCAGUA ....((((((......))))))..((.(((((((((..(((((((....))))))).....(((((((........)))))))....))))).((((.....))))..))))))... ( -41.40) >DroAna_CAF1 287360 105 - 1 GCCAGAGUUAUCAUCCAAUAU------AGAGGCU------GGCGCAUGGGCACCGCAAAAAGUGCUGCCUUUGUUGGCAGUCAUUUUGCAGCGACGUUUCUUGCGCGGUACCCAAUA (((((..((((........))------))...))------)))...((((.(((((..(((((((((((......))))).))))))((((.((....))))))))))).))))... ( -42.70) >consensus UCCAGAUUUGUCAUCAGAAGUUGCAGUGGUGGCUGUCGUUGGGGCAUGGGCUCCACAAAACUCACUGCCCUUAUUUGCAGUCAUCUUGCAGCGGCGCUUUUUGCGUGGCACCCAGUA ...........................(((((((((....(((((....))))).........(((((........)))))......))))).((((.....))))..))))..... (-20.33 = -21.08 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:40 2006