| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,216,910 – 15,217,030 |
| Length | 120 |
| Max. P | 0.775774 |
| Location | 15,216,910 – 15,217,030 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.67 |
| Mean single sequence MFE | -40.19 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.42 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15216910 120 + 27905053 UUGCCGAACUGGAAUCCAUGUUCGCUAAUAAACGAGGAGCUGAAGCUAGGGCCAUGCUGCGCCUGUGCAACAGUUUCGAUGAUCAGAACGACCUGGACUUGUGGACCCUGUUCUCAAGUA (((.((((((((...))).))))).))).......(((((((..((((((((......)).)))).))..))))))).....((((......))))(((((.((((...)))).))))). ( -34.60) >DroVir_CAF1 162269 120 + 1 UUGCCGAACUGGAGUACAUGUUUGACAACAAACGCGCAGCUGAAGCACGUGCUAUGUUGCGUAUAUGCAGCAGUUUUGAUCAUGAAAAUGAUCUGGAUAUGUGGAACUUAUUCGGCAGCA ((((((((..((..(((((((((......((((((((.((....))..))))..(((((((....))))))))))).((((((....)))))).)))))))))...))..)))))))).. ( -41.20) >DroGri_CAF1 187036 120 + 1 UAGCCGAUUUGGAGUACAUGUUUGACAACAAACGUUCGGCUGAGGCACGCUCAAUGCUGCGCUUAUGCAGCAGUUUUGAUCAUGAAAACGAUUUGGAUAUGUGGAACUUGUUUGGCAGUA ..(((((............(((((....)))))((((.((((((.....)))).(((((((....)))))))(((..((((.(....).))))..)))..)).))))....))))).... ( -32.70) >DroWil_CAF1 171268 120 + 1 UUGCCGAAUUGGAAUCAAUGUUCGAAAACAAUCGAGCUGCGGAAGCAAGAGCCAUGCUACGUUUGUGCAGUUCGUUUGACGACAAAAACGAUCUGGAUUUGUGGACAUUGUUUGGUAGUA ((((((((.......((((((((.....(((.(((((((((.((((...(((...)))..)))).))))))))).)))...(((((..(.....)..))))))))))))))))))))).. ( -39.21) >DroMoj_CAF1 164497 120 + 1 UAGCCGAACUGGAGUCCAUGUUUAAGAACAAGCGCGCGGCUGAAGCACGUGCCAUGCUGCGUAUUUGCAGCAAUUUUGAUCAUGAAAACGAUCUGGAUUUGUGGAGCUUGUUCGGCAGCA ..((((((((((...))).))))..(((((((((((((((....)).)))))(((((((((....))))))((((..((((.(....).))))..)))).)))..))))))))))).... ( -47.50) >DroAna_CAF1 135311 120 + 1 UCGCCGAGCUGGAGUCCUUGUUCGCCAACAAACGGGGUGCGGAAGCCAGGGCCAUGUUGCGGUUGUGCAACAGCUUCGAUGACCAGAACGACUUGGACCUGUGGUCCCUGUUCGGCAGUA ..(((((((.((((((...((((.((.......))(((((....))(..(((..(((((((....))))))))))..)...))).)))))))))(((((...)))))).))))))).... ( -45.90) >consensus UUGCCGAACUGGAGUCCAUGUUCGACAACAAACGAGCAGCUGAAGCAAGGGCCAUGCUGCGUUUGUGCAGCAGUUUUGAUCAUGAAAACGAUCUGGAUUUGUGGACCUUGUUCGGCAGUA ..(((((((.((...(((((((((..............((....))........(((((((....))))))).....................)))))..))))..)).))))))).... (-21.10 = -21.42 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:33 2006