Locus 5818

Sequence ID 3R_DroMel_CAF1
Location 15,205,751 – 15,205,846
Length 95
Max. P 0.973903
window9531

overview

Window 1

Location 15,205,751 – 15,205,846
Length 95
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 95.86
Mean single sequence MFE -27.72
Consensus MFE -25.70
Energy contribution -25.53
Covariance contribution -0.17
Combinations/Pair 1.11
Mean z-score -1.56
Structure conservation index 0.93
SVM decision value 1.72
SVM RNA-class probability 0.973903
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15205751 95 - 27905053
ACAGGGCUUGGCCAAAAGACACAGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUACAUAAAUUGCCAAUCCGAGCGGGUUGCUCUCCUUGUU
((((((..((((((...(((((((((.(((.....))).))))...))))).))))))........((.(((((....)))))))...)))))). ( -28.90)
>DroSec_CAF1 129070 95 - 1
ACAGGGCUUGGCCAAAAGACACAGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUACAUAAAUUGCCAAUCCGAGCGGGCUGCUCUCCUUGUU
((((((..((((((...(((((((((.(((.....))).))))...))))).))))))................((((.....)))).)))))). ( -27.40)
>DroSim_CAF1 139806 95 - 1
ACAGGGCUUGGCCAAAAGACACAGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUACAUAAAUUGCCAAUCCGAGCGGGCUGCUCUCCUUGUU
((((((..((((((...(((((((((.(((.....))).))))...))))).))))))................((((.....)))).)))))). ( -27.40)
>DroEre_CAF1 127171 95 - 1
ACAGGGCUUGGCCGAAAGACACAGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUAUAUAAAUUGCCAAUCUGAGCGGGUUGCUCUCCUUGUU
((((((..((((((...(((((((((.(((.....))).))))...))))).))))))................((((.....)))).)))))). ( -26.50)
>DroYak_CAF1 135756 95 - 1
ACAGGGCUUGGCCAAAAGACACAGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUACAGAAAUUGCCAAUCUGAGCGGGUUGCUCUCCUUGUU
((((((((((((((...(((((((((.(((.....))).))))...))))).)))))).)).............((((.....)))).)))))). ( -27.40)
>DroAna_CAF1 124622 95 - 1
ACAGGGCUUGGCCGAAAGACUCGGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUACAUAAAUUGCCAAUCCGAGCAGGUUGCUCUUGUUGUU
(((((((((((((((.....))))))))........((((((.(((.....)))))).))).....))).....((((.....))))...)))). ( -28.70)
>consensus
ACAGGGCUUGGCCAAAAGACACAGCUAAUUUAAUCAAUGAGCUCACGUGUUGUGGCUACAUAAAUUGCCAAUCCGAGCGGGUUGCUCUCCUUGUU
((((((..((((((...(((((((((.(((.....))).))))...))))).))))))................((((.....)))).)))))). (-25.70 = -25.53 +  -0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:32 2006