| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,202,652 – 15,202,767 |
| Length | 115 |
| Max. P | 0.865342 |
| Location | 15,202,652 – 15,202,767 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.65 |
| Mean single sequence MFE | -50.03 |
| Consensus MFE | -39.06 |
| Energy contribution | -40.53 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.865342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15202652 115 + 27905053 GCUUUUGCCAUCUAGUAGGUUCCGGACGAACGGCGGGAUUGGGUAUCGAUGACUUGGGUCUCGAGUUUCGAUCGCACCACUCCAUCGUCGAAGUUCGGAGUUUUUGUGUGGCCGU ......(((((.(((.(..((((((((...((((((((.((((((((((.((((((.....))))))))))).)).))).)))..)))))..))))))))..)))).)))))... ( -45.60) >DroSec_CAF1 125945 115 + 1 GCUUUUGCCAUCUAGUAGGUUCCGGGCGCACGGCGGGAGUGGGUAUCGAUGACUUGGGUCUCGAGUUUCGAUCGCACCACUCCAUCGUCGAAGCUCGGAGUUUUUGUGUGGCCGU ......(((((.(((.(..((((((((...(((((((((((((((((((.((((((.....))))))))))).)).)))))))..)))))..))))))))..)))).)))))... ( -53.60) >DroSim_CAF1 136697 115 + 1 GCUUUUGCCAUCGAGUAGGUUCCGGGCGCACGGCGGGAGUGGGUAUCGAUGACUUGGGUCUCGAGUUUCGAUCGCACCACUUCAUCGUCGAAGCUCGGAGUUUUUGUGUGGCCGU ......((((.((...(..((((((((...(((((((((((((((((((.((((((.....))))))))))).)).)))))))..)))))..))))))))..)...))))))... ( -50.10) >DroEre_CAF1 124153 115 + 1 GCUUUUGCCAUCUAGUAGCUUCCGGGCGCACGGCGGGAGUGGGAAUCGAAGGCUUGGGUCUCGAGUUUCGGUUGCACCACUCCAUCGUCGAAGCUCGGAGUUUUUGUGGGGCCGU ......(((...(((.((((.((((((...(((((((((((((((((((((.((((.....)))))))))))).).)))))))..)))))..)))))))))).)))...)))... ( -49.80) >DroYak_CAF1 131955 115 + 1 GCUUUUGCCAUCUAGUAGCUUCCGGGCGCACGGCGGGAGUGGGCGUCGAAGACUUGGGUCUCGAGUUUCGAUCGCACCACUCCAUCGUCGAAGCUCGGAGUUUUUGUCUGGCCGU ......((((..(((.((((.((((((...(((((((((((((((((((.((((((.....)))))))))).))).)))))))..)))))..)))))))))).)))..))))... ( -55.60) >DroAna_CAF1 121883 115 + 1 GUUUUUGCCAGCGAGUCGGGUUCGGUCUCGUGAAUGGUGUGUAGAACGGAGGCUUGGGCUUCGAGUUGCGAUCACACCACUCGCGUUGCGAAGAACGGACUAAGCGCGCGUCCGA .(((((((.(((((((((....))).)))((((.(((((((..((((.(((((....)))))..))).)...))))))).)))))))))))))).(((((.........))))). ( -45.50) >consensus GCUUUUGCCAUCUAGUAGGUUCCGGGCGCACGGCGGGAGUGGGUAUCGAAGACUUGGGUCUCGAGUUUCGAUCGCACCACUCCAUCGUCGAAGCUCGGAGUUUUUGUGUGGCCGU ......(((((.....(((((((((((...(((((((((((((((((((.((((((.....))))))))))).)).)))))))..)))))..)))))))))))....)))))... (-39.06 = -40.53 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:31 2006