| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,202,419 – 15,202,517 |
| Length | 98 |
| Max. P | 0.987691 |
| Location | 15,202,419 – 15,202,517 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 67.56 |
| Mean single sequence MFE | -28.67 |
| Consensus MFE | -11.87 |
| Energy contribution | -13.32 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.41 |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.987691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15202419 98 + 27905053 AUAUUGGUUUUCCGUUAGAGGACUAACU---UCUGGCAAGGAAGGCUUCU---------CAACAAUGGGUUUGCUAAGAAAGGAUCGAGUUAUGGUUGA---------GAAAACUACCA .....((....))((((((((.....))---))))))..((.((..((((---------((((.((((.((..((......))...)).)))).)))))---------)))..)).)). ( -27.30) >DroSec_CAF1 125715 98 + 1 AUAUGGGUUUUCCCUUAGAGGAAUAACU---UCGGCCACAGAAGGCUUCU---------CAACAAUUGGUUUGCUAAGGGAGGACCGAGUUAUGGUUGA---------GAAAACUACCA .....(((((((((((((((((....((---((.......))))..))))---------)..(((.....))).))))))))))))......(((((..---------...)))))... ( -28.70) >DroSim_CAF1 136467 98 + 1 AUAUGGGUUUUCCCUUAGAGGAAUAACU---UCUGCCACAGAAGGCUUCU---------CAACAAUUGGUUUGCUAAGGGAGGAUCGAGUUAUGGUUGA---------GAAAACUACCA .....(((((((((((((((((....((---((((...))))))..))))---------)..(((.....))).))))))))))))......(((((..---------...)))))... ( -28.30) >DroEre_CAF1 123914 92 + 1 AUUUCGGUUUUCCCUUAGACAAGUAACU---UCUGCCAAAGAAGGCUUGU---------CAACAAUUUGUUUGCUA-GGGAAGAUCGAGUAAUGG--------------GAAACUACCA ..(((((((((((((..(((((((..((---(((.....)))))))))))---------)..(((.....)))..)-))))))))))))...(((--------------....)))... ( -34.40) >DroYak_CAF1 131673 107 + 1 AUUUUGGUUUUCCCUUAGACAACUAACU---UCUGCCGAAGACGGCUUGU---------UAACAAUUUGAUUGCUAAGGGAAGAUCGAGUUGUGGUUGAUAAGAAUAAGAAAACUAGCA ..((((((((((((((((.(((.((((.---...((((....))))..))---------)).(.....).)))))))))))))))))))...(((((..............)))))... ( -29.84) >DroAna_CAF1 121657 96 + 1 UUCAAAGACAUCGCUCGA------AACUUGCUCUCUUAAUGGCGGCUUCUUCCCGCUAUUAACUAUUGC---CCUAGAGAAGGGUUACGGUCUGGUUUA---------A-GGACU---- (((..((((...((.((.------(((((..((((((((((((((.......)))))))))........---...))))).))))).))))...)))).---------.-)))..---- ( -23.50) >consensus AUAUGGGUUUUCCCUUAGAGGAAUAACU___UCUGCCAAAGAAGGCUUCU_________CAACAAUUGGUUUGCUAAGGGAGGAUCGAGUUAUGGUUGA_________GAAAACUACCA .....(((((((((((((................(((......)))................(((.....))))))))))))))))................................. (-11.87 = -13.32 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:29 2006