| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,198,823 – 15,198,917 |
| Length | 94 |
| Max. P | 0.711064 |
| Location | 15,198,823 – 15,198,917 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.57 |
| Mean single sequence MFE | -26.03 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.98 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15198823 94 - 27905053 UUUGUCAUAUUUUGCUUGGUGCAAUUCCAUUGUUGUUAUUUCUUUGGGCCUUUCGUGUCAAUUGGCAAUAUGAAGAGGGCCCAGA----------------CCAUACAAA ..........((((..(((((((((......))))).......((((((((((..((((....)))).......)))))))))))----------------)))..)))) ( -26.10) >DroSec_CAF1 122165 94 - 1 UUUGUCAUAUUUAGCUUGGUGCAAUUCCAUUGUUGUUAUUUCUUUGGGCCUUUCGUGUCAAUUGGCAAUAUGAAGAGGGCCCAGA----------------CGAGGCAAA .(((((.....((((.(((.......)))..)))).....(((((((((((((..((((....)))).......)))))))))))----------------.))))))). ( -27.80) >DroSim_CAF1 124826 92 - 1 UUUGUCAU--UUUGCUUGGUGCAAUUCCAUUGUUGUUAUUUCUUUGGGCCUUUCGUGUCAAUUGGCAAUAUGAAGAGGGCUCAGA----------------CGAGGCAAA ........--(((((((.(((((((......))))).......((((((((((..((((....)))).......)))))))))))----------------).))))))) ( -25.60) >DroEre_CAF1 120439 93 - 1 UUUGUCAUAUUU-GCUUGCUGCAACUCCAUUGUUGUUAUUUCUUGGGGCCUUUCGUGUCGAUUGGCAAUAUGGAGAGGGCCCAGA----------------CGAUGUAAA .(((((......-.......(((((......))))).......((((.((((((.((((....)))).....)))))).))))))----------------)))...... ( -28.00) >DroYak_CAF1 128062 94 - 1 UUUGUCAUAUUUCGUUUGCUGCAAUUUCAUUGUUGUUAUUUCUUUGGGCCUUUCGUGUCAAUAGGCAAUAUGAAGAGGGCCCAGA----------------CGAUGCAAA ..............(((((.(((((......)))))....(((((((((((((..((((....)))).......)))))))))))----------------.)).))))) ( -24.80) >DroAna_CAF1 118031 100 - 1 UUUGUUUU--CUUUUUUGCUGC-------UUGCAGUUAUUUCUGUG-GCCUUUCGUGCCAAUAGGCAAUAUGAAGGUGCCCCAAGUCCCAAGUUCCAAGCCCAAAGUGAA ......((--(..(((((..((-------((((((......))).(-((((((((((((....))))...)))))).)))...............))))).))))).))) ( -23.90) >consensus UUUGUCAUAUUUUGCUUGCUGCAAUUCCAUUGUUGUUAUUUCUUUGGGCCUUUCGUGUCAAUUGGCAAUAUGAAGAGGGCCCAGA________________CGAUGCAAA ....................(((((......)))))......(((((((((((((((((....))))...))))..)))))))))......................... (-15.28 = -15.98 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:24 2006