Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,191,706 – 15,191,802 |
Length | 96 |
Max. P | 0.895989 |
Location | 15,191,706 – 15,191,802 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.52 |
Mean single sequence MFE | -18.58 |
Consensus MFE | -15.42 |
Energy contribution | -16.42 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.83 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15191706 96 - 27905053 CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUUGCUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((....(((((..(((((((..........)))))))...))))).(((....))))))))))))..................... ( -19.50) >DroSec_CAF1 115148 95 - 1 CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((....(((((..(((((((.......-..)))))))...))))).(((....))))))))))))..................... ( -19.60) >DroSim_CAF1 117689 95 - 1 CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((....(((((..(((((((.......-..)))))))...))))).(((....))))))))))))..................... ( -19.60) >DroEre_CAF1 113800 95 - 1 CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAACUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((.....((((..(((((((.......-..)))))))...))))..(((....))))))))))))..................... ( -19.20) >DroYak_CAF1 120436 95 - 1 CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((....(((((..(((((((.......-..)))))))...))))).(((....))))))))))))..................... ( -19.60) >DroAna_CAF1 111078 85 - 1 CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU-CUUUUAAUUAUUU----------CUGCUGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((......(((..(((((((.......-..)))))))....----------.))).)))))))))..................... ( -14.00) >consensus CACGUUACCAGCUUUAAUGCAUCAAUUAAAUUUUUUU_CUUUUAAUUAUUUGUAUCUGCUGCUGCAGUUGGUGGCUUUUUGUUCCUGCUACUCCUG ...(((((((((.....((((..(((((((..........)))))))...))))..(((....))))))))))))..................... (-15.42 = -16.42 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:23 2006