Locus 5811

Sequence ID 3R_DroMel_CAF1
Location 15,188,386 – 15,188,480
Length 94
Max. P 0.509547
window9521

overview

Window 1

Location 15,188,386 – 15,188,480
Length 94
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.60
Mean single sequence MFE -34.75
Consensus MFE -11.82
Energy contribution -11.32
Covariance contribution -0.50
Combinations/Pair 1.21
Mean z-score -3.06
Structure conservation index 0.34
SVM decision value -0.05
SVM RNA-class probability 0.509547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15188386 94 + 27905053
UCCCUGUGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUCGCACCGGC-------CAUCCUGC-------------CGAAGACCUUUCACAAUC--UGCGCCUGG----UCGUGUGA
.((((((((........))))))))................((((((((((-------......))-------------))..((((...(.(....--.).)...))----)))))))) ( -27.20)
>DroPse_CAF1 125410 120 + 1
GCCCCAUGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUAGACCCGGCUGGCAGCAAUCCUGCUCCCCAACAGACACACAGACCUUUCACAAUCUCUGUGUCUGGUCGGUCGUGUGA
(((((((((........)))))))))..................((.((((((((((((....))))......((((((((.(((..........))).)))))))))))))))).)).. ( -46.40)
>DroEre_CAF1 110411 94 + 1
UCCCUGUGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUUGCACCGGC-------CAUCCUGG-------------CGAAGACCUUUCACAAUC--UGCGUCUGG----UCGUGUGA
.((((((((........))))))))...................(((((((-------((....((-------------((.(((..........))--).)))))))----))).))). ( -25.60)
>DroYak_CAF1 116266 94 + 1
UCCCUGUGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUUGCACCGGC-------CAUCCUGG-------------CGCAGACCUUUCACAAUC--UGCGCCUGG----UCGUGUGA
.((((((((........))))))))...................(((((((-------((....((-------------((((((..........))--)))))))))----))).))). ( -34.90)
>DroAna_CAF1 108118 94 + 1
UCCCUGCGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUAGCCCCGGU-------CAUCCUGC-------------CGCAGACCUUUCACAAUC--UGCGCCUGG----UCGUGUGA
...(((((((..........((((((.................))))))..-------......))-------------))))).....(((((..(--(......))----...))))) ( -28.00)
>DroPer_CAF1 120965 120 + 1
GCCCCAUGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUAGACCCGGCUGGCAGCAAUCCUGCUCCCCAACAGACACACAGACCUUUCACAAUCUCUGUGUCUGGUCGGUCGUGUGA
(((((((((........)))))))))..................((.((((((((((((....))))......((((((((.(((..........))).)))))))))))))))).)).. ( -46.40)
>consensus
UCCCUGUGGUUUCCCUUUCAUGGGGCGUUUUCAAUUUAAUUUAGCACCGGC_______CAUCCUGC_____________CGCAGACCUUUCACAAUC__UGCGCCUGG____UCGUGUGA
.((((((((........))))))))................................................................(((((.......(.....).......))))) (-11.82 = -11.32 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:22 2006