| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 15,187,428 – 15,187,523 |
| Length | 95 |
| Max. P | 0.534176 |
| Location | 15,187,428 – 15,187,523 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.72 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.80 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534176 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15187428 95 - 27905053 G-----------------CUGUUUCUGUUUUUUUUCUUUCUGUUGCCGCUCAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUUUUCAGUUGGG .-----------------.................((..(((.((((((....(((((((......)))))))...))).)))((((......)))).......)))..)). ( -20.90) >DroSec_CAF1 110788 89 - 1 G-----------------CUGUUUAUGUUGUUUU------UGUUGCUGCUCAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUUUUCAGUUGGG (-----------------(((......(((((.(------((.((((((....(((((((......)))))))...))).)))..)))...)))))........)))).... ( -20.74) >DroSim_CAF1 113426 79 - 1 G-----------------CUGUUUCUGUUGUUUU------UGUUGCCGCUCAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUU---------- .-----------------.......((((((.((------...((((((....(((((((......)))))))...))).)))...)).)))))).......---------- ( -22.20) >DroEre_CAF1 109210 89 - 1 G-----------------CUGUUUCUGUUGUUUU------UGUUGCCACUCAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUUUUCAGUUGGG .-----------------(((...(((.....((------(((((((((...)))))...(((((((((((.....)))).)))))))...)))))).......))).))). ( -20.20) >DroYak_CAF1 115333 80 - 1 G-----------------CUGU---------UUU------UGUUGCCACUCAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUUUUCAGUUGGG (-----------------(((.---------.((------(((((((((...)))))...(((((((((((.....)))).)))))))...)))))).......)))).... ( -19.80) >DroAna_CAF1 107085 106 - 1 GAAAUGUUGCUGCCGCCUCUGUUGCUGGUGUUGU------UGUUGUUGCACAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUUUUCUGUUGAG ((((.........((((.((((.((.........------.......)))))).))))..(((((((((((.....)))).))))))).............))))....... ( -24.29) >consensus G_________________CUGUUUCUGUUGUUUU______UGUUGCCGCUCAGUGGCGUCUUAAGUGGCGCUAAAUGCGUGCAUUUAAUAUAAUAAAUCUUUUUCAGUUGGG ...........................................((((((....(((((((......)))))))...))).)))............................. (-15.83 = -15.80 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:21 2006