Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,169,978 – 2,170,068 |
Length | 90 |
Max. P | 0.626050 |
Location | 2,169,978 – 2,170,068 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 75.57 |
Mean single sequence MFE | -13.91 |
Consensus MFE | -2.61 |
Energy contribution | -3.01 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.45 |
Mean z-score | -1.61 |
Structure conservation index | 0.19 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2169978 90 + 27905053 CACUAACAAAAGCACACUAAAAAGAUCCAAAUAUAUA---GAGGAUAUCUUUGUCUUAAUAAAUUGGAUCCGAAUAGUAUGUACUCAACUACG ...........(((.((((....(((((((.......---.((((((....))))))......)))))))....)))).)))........... ( -17.04) >DroSec_CAF1 312090 91 + 1 CACUAACAAAA-CACAUUAAAAAGAUCGAAGUAUAUA-AGAAGGAUUACUAUUUCUUAAUAACUUAGAUCUGAAUAGUAUGCACUCAACUACG ...........-((.((((...(((((.((((...((-(((((........)))))))...)))).)))))...)))).))............ ( -14.50) >DroSim_CAF1 328248 91 + 1 CACUAACAAAA-CACAUUAAAAAGAUCCAAGUAUAUA-AGAAGGAUUACUAUUUCUUAAUAACUUAGAUCUGAAUAGUAUGCACUCAACUACG ...........-((.((((...(((((.((((...((-(((((........)))))))...)))).)))))...)))).))............ ( -14.50) >DroEre_CAF1 315662 92 + 1 CUCUAGGAAAU-CACUCUUAACUCAUUCAGGCAUAUUGAAAAAUAUUACAUUGCCUUAAGAAAUAGGAUCCGAAUAGUGUGUACUCAUUAACG .....(((...-...(((((..((.((.(((((((((....))))......))))).))))..))))))))...(((((......)))))... ( -14.10) >DroYak_CAF1 316447 92 + 1 CACUAAAAAAA-CACUCUAAAACCAUCGAUGUACAUAGAAAAGGAAUAAAUGGUUUUAAUAAAUUGGAUCCGAACAGUAUUUACUCAACUAAG ...........-.....(((((((((..((...(........)..))..)))))))))....((((........))))............... ( -9.40) >consensus CACUAACAAAA_CACACUAAAAAGAUCCAAGUAUAUA_AAAAGGAUUACUUUGUCUUAAUAAAUUGGAUCCGAAUAGUAUGUACUCAACUACG ..............................((((((......(((((...................))))).....))))))........... ( -2.61 = -3.01 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:38 2006