Locus 5809

Sequence ID 3R_DroMel_CAF1
Location 15,183,661 – 15,183,767
Length 106
Max. P 0.595525
window9519

overview

Window 9

Location 15,183,661 – 15,183,767
Length 106
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 84.43
Mean single sequence MFE -26.72
Consensus MFE -18.35
Energy contribution -21.11
Covariance contribution 2.75
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 0.69
SVM decision value 0.12
SVM RNA-class probability 0.595525
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15183661 106 - 27905053
UGUUACAUAUAUUUUCCCCGAAGCUCCUAAUUAGCCAAAGCCGGUUCUUUCGGCGGUUUCUGCUUAAGGCUUUGGUUUUCUUUUUUCGGCUGCUGCGGUGGCCGUU
.................((((((((..(((.(((.....(((((.....))))).....))).))).))))))))...........((((..(....)..)))).. ( -30.90)
>DroSec_CAF1 107013 106 - 1
UGUUACAUAUAUUUUCCCCGAAGCUCCUAAUUAGCCAAAGCCGGUUCUUUCAGCGGUUUCUGCUUAAGGCUUUGGUUUUCUUUUUUCGGCUGCUGCGGUGGCCGUU
.................((((((((.......(((..((((((.(......).))))))..)))...))))))))...........((((..(....)..)))).. ( -29.90)
>DroSim_CAF1 109659 106 - 1
UGUUACAUAUAUUUUCCCCGAAGCUCCUAAUUAGCCAAAGCCGGUUCUUUCGGCGGUUUCUGCUUAAGGCUUUGGUUUUCUUUUUUCGGCUGCUGCGGUGGCCGUU
.................((((((((..(((.(((.....(((((.....))))).....))).))).))))))))...........((((..(....)..)))).. ( -30.90)
>DroAna_CAF1 103221 80 - 1
UGUUACAUAUAUUUUCCUCGAAGCUCCUAAUUAGCCAAAGCCGGUUCUUUCGGC--------------------------CUUUUUGGGCUGCUGUUGUUGCCGUU
.....................(((.(((((..((.....(((((.....)))))--------------------------))..)))))..)))............ ( -15.20)
>consensus
UGUUACAUAUAUUUUCCCCGAAGCUCCUAAUUAGCCAAAGCCGGUUCUUUCGGCGGUUUCUGCUUAAGGCUUUGGUUUUCUUUUUUCGGCUGCUGCGGUGGCCGUU
.................((((((((..............(((((.....))))).............))))))))...........(((((((....))))))).. (-18.35 = -21.11 +   2.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:20 2006