Locus 5805

Sequence ID 3R_DroMel_CAF1
Location 15,157,586 – 15,157,676
Length 90
Max. P 0.597832
window9510

overview

Window 0

Location 15,157,586 – 15,157,676
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 90.32
Mean single sequence MFE -33.00
Consensus MFE -26.70
Energy contribution -27.26
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.41
Structure conservation index 0.81
SVM decision value 0.13
SVM RNA-class probability 0.597832
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15157586 90 + 27905053
CAUGUGGCGGAGCCAGCAUCAAGUGGCUGCCACAAGUCCUGCCAGCAGGCCGGAUGUUCUUGCCAUCGAUAGAUUUAGGAGUAGCAAACU
..((((((..(((((........))))))))))).((((.(((....))).)))).((((((..(((....))).))))))......... ( -29.10)
>DroSec_CAF1 81219 90 + 1
CAUGUGGCGGAGCCUGCAUCAAGUGGCUGCCACAAGUCCUGCCAGCAGGCCGGAUGUUGUUCCCAUCGAUUGAUUUGGGAGUAGCAAACU
..((((((..((((.((.....)))))))))))).((((.(((....))).))))((((((((((..........))))))))))..... ( -35.80)
>DroSim_CAF1 80245 90 + 1
CAUGUGGCGGAGCCUGCAUCAAGUGGCUGCCACAAGUCCUGCCAGCAGGCCGGAUGUUGUUGCAAUCGAUCGAUUUGGGAGUAGUAAACU
..((((((..((((.((.....)))))))))))).((((.(((....))).)))).(((((((..((((.....))))..)))))))... ( -29.10)
>DroEre_CAF1 79683 89 + 1
UAUGUGGCGGGGCCAGGAUCAAGUGGCUGCCACA-GUCCUGCCAGCAGGCCGGAUGUUGUUUCCAUCGAUCGAAUUGGGAGUAGCGCACU
..((((((..(((((........)))))))))))-((((.(((....))).))))((((((((((((....))..))))))))))..... ( -34.00)
>DroYak_CAF1 82369 89 + 1
UAUGUGGCGGGGCCAGGAUCAAGUGGCUGCCACA-GUUCGGCCAGCGGGCCGGAUGUUGUUGCCAUCGAUCGAUUUGGGAGUAGCCAACU
..((((((..(((((........)))))))))))-((((((((....))))))))((((((((..((((.....))))..)))).)))). ( -37.00)
>consensus
CAUGUGGCGGAGCCAGCAUCAAGUGGCUGCCACAAGUCCUGCCAGCAGGCCGGAUGUUGUUGCCAUCGAUCGAUUUGGGAGUAGCAAACU
..((((((..((((..........)))))))))).((((.(((....))).)))).(((((((..((((.....))))..)))))))... (-26.70 = -27.26 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:12 2006