Locus 5804

Sequence ID 3R_DroMel_CAF1
Location 15,154,413 – 15,154,507
Length 94
Max. P 0.993746
window9509

overview

Window 9

Location 15,154,413 – 15,154,507
Length 94
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 69.97
Mean single sequence MFE -41.20
Consensus MFE -22.94
Energy contribution -26.50
Covariance contribution 3.56
Combinations/Pair 1.11
Mean z-score -2.27
Structure conservation index 0.56
SVM decision value 2.42
SVM RNA-class probability 0.993746
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15154413 94 - 27905053
GGGGAUCA--AGGGGCUAAAGGGGCCUUAAG-GGGCUUCGGGGGGUUAAACGGCGCGCUCCGGCGAUCGAGAGGCUGCCGUUUGACUUUGCCCCACA
........--.(((((....(((((((....-)))))))..(((((((((((((((.(((((.....)).))))).))))))))))))))))))... ( -46.40)
>DroSim_CAF1 77034 86 - 1
----------AGGGGCUAAAGGGGCCUCGAG-GGGCUUCAGGGGGUUAAACGGCGAUCUCCAACGAUCGAGAGGCUGCCGUUUGACUUUGCCCCACA
----------.(((((....(((((((....-)))))))..((((((((((((((..((((.......).)))..)))))))))))))))))))... ( -45.80)
>DroEre_CAF1 76734 95 - 1
AGGGGUCUUGGGGGGCUUCAGGGGC-UUAAG-GGGCUUCAGGGGGCUAAACGGCGCGCUCCGGCGAUCGAGAGGCUGCCGUUUGGCUUUGCCCCACA
.((((((((...(((((.....)))-))..)-))))))).((((((((((((((((.(((((.....)).))))).))))))))))....))))... ( -45.50)
>DroYak_CAF1 79257 77 - 1
AGGGGUCUUGAGG--------------------GGCUUCAGGGGGUUAAACGGCGCGCUCCGGCGAUCGAAAGGCUGCCGUUUGGCUUUGCCCCACA
.(((((((((((.--------------------...))))))((((((((((((.(((....))).((....))..)))))))))))).)))))... ( -35.70)
>DroAna_CAF1 75902 77 - 1
------------GGGCACCGGGGGCGUCGCGGAGGCUGCUGGGGG--------GGUGCCACAGCGAUCGAGAGGCUGCCGUUCGUCUUUGCCCCACA
------------(((((...((((((..((((.((((((((((..--------....)).)))))..(....)))).)))).))))))))))).... ( -32.60)
>consensus
_GGG_UC___AGGGGCUAAAGGGGC_UCAAG_GGGCUUCAGGGGGUUAAACGGCGCGCUCCGGCGAUCGAGAGGCUGCCGUUUGACUUUGCCCCACA
...........(((((....(((((.........)))))..((((((((((((((.(((....(....)...))))))))))))))))))))))... (-22.94 = -26.50 +   3.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:11 2006