Locus 5802

Sequence ID 3R_DroMel_CAF1
Location 15,151,854 – 15,151,970
Length 116
Max. P 0.994459
window9504

overview

Window 4

Location 15,151,854 – 15,151,970
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.01
Mean single sequence MFE -39.46
Consensus MFE -34.14
Energy contribution -33.90
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -2.11
Structure conservation index 0.87
SVM decision value 2.48
SVM RNA-class probability 0.994459
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 15151854 116 + 27905053
GGGACUUGUGUUUUUCAAAAUGC-CUUGGCUGCG-GAGCUGCCUUUUUCGAGUUAUUCGCGCGGCCGAGUUGAAAAACGUAAUGCCGUUCAUGUCCACGACCAAAACACUAUUCACCU--
.((..(((((((((((((.....-((((((((((-(((..(((......).))..))).)))))))))))))))))))))))..))(((...(((...)))...)))...........-- ( -33.20)
>DroSec_CAF1 75454 116 + 1
GGGACUUGUGUUUUUCAAAAUGC-CUUGGCUGCG-GAGCUGCCUUUUUCGAGCUAUUCGCGCGGCCGAGUUGAAAAACGUAAUGCCGUUCAUGUCCACGACCGAAACAGUAUUCACCU--
(((......(((((((((.....-((((((((((-(((..(((......).))..))).)))))))))))))))))))(.(((((.(((...(((...)))...))).)))))).)))-- ( -36.60)
>DroSim_CAF1 74501 116 + 1
GGGACUUGUGUUUUUCAAAAUGC-CUUGGCUGCG-GAGCUGCCUUUUUCGAGUUAUUCGCGCGGCCGAGUUGAAAAACGUAAUGCCGUUCAUGUCCACGACCGAAACAGUAUUCACCU--
(((......(((((((((.....-((((((((((-(((..(((......).))..))).)))))))))))))))))))(.(((((.(((...(((...)))...))).)))))).)))-- ( -34.90)
>DroEre_CAF1 74741 120 + 1
GGGACUUGUGUUUUUCAAAAUGCUCUUGGCUGCGGGAGCUGCCUUUUUCGAGUUAUUCGCGCGGCCGAGUUGAAAAACGUAAUGCCGUUAAUGUCCAAGACCAAAACGCAAGUCCCCUGU
((((((((((((((((((......((((((((((.(((..(((......).))..))).)))))))))))))))))))........(((...(((...)))...)))))))))))).... ( -46.60)
>DroYak_CAF1 77071 120 + 1
GGGACUUGUGUUUUUCAAAAUUCUCUUGGCUGCGGGAGCUGCCUUUUUCGAGCUAUUCGCGCGGCCGAGUUGAAAAACGUAAUGCCGUUAAUGUCCAAGACCAAAACUCAAGUCCCCUGU
((((((((.(((((((....(((.((((((((((.(((..(((......).))..))).))))))))))..))).((((......)))).........))..))))).)))))))).... ( -46.00)
>consensus
GGGACUUGUGUUUUUCAAAAUGC_CUUGGCUGCG_GAGCUGCCUUUUUCGAGUUAUUCGCGCGGCCGAGUUGAAAAACGUAAUGCCGUUCAUGUCCACGACCAAAACACUAUUCACCU__
.((..(((((((((((((......((((((((((.(((..(((......).))..))).)))))))))))))))))))))))..))(((...(((...)))...)))............. (-34.14 = -33.90 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:06 2006