Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,151,561 – 15,151,658 |
Length | 97 |
Max. P | 0.999067 |
Location | 15,151,561 – 15,151,658 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 94.53 |
Mean single sequence MFE | -27.34 |
Consensus MFE | -24.56 |
Energy contribution | -24.40 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.29 |
Structure conservation index | 0.90 |
SVM decision value | 3.35 |
SVM RNA-class probability | 0.999067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15151561 97 - 27905053 UAAAAAAUCGCGAAUGAUUA-AGAAUCGCGGCACCGUUAGUUCCCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA ........(((((.......-....)))))((..((..((......))..))(((((((.(((..(((......)))..))).))))))).....)). ( -27.60) >DroSec_CAF1 75162 96 - 1 UAA-AAAUCGCGAAUGAUUA-AGAAUUGCGGCACCCUUAGUUCGCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA ...-.....(((........-.((((((.((...)).)))))).........(((((((.(((..(((......)))..))).)))))))....))). ( -28.20) >DroSim_CAF1 74212 96 - 1 UAA-AAAUCGCGAAUGAUUA-AGAAUCGCGGCACCCUUAGUUCCCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCC ...-.....((((.......-....))))(((......((......))....(((((((.(((..(((......)))..))).))))))).....))) ( -25.20) >DroEre_CAF1 74450 95 - 1 UAA-AAAA--CGAAUGAUUAAAGAAUCGCGGCACCGUUAGUUCUCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA ...-....--.....((((....))))((((...((..((......))..))(((((((.(((..(((......)))..))).)))))))...)))). ( -27.50) >DroYak_CAF1 76780 95 - 1 UAA-AAAA--CGAAUGAUUAAAGAAUCGCGGCACCGUUAGUUCCCUCUGUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA ...-....--.....((((....))))((((...((.(((......))).))(((((((.(((..(((......)))..))).)))))))...)))). ( -28.20) >consensus UAA_AAAUCGCGAAUGAUUA_AGAAUCGCGGCACCGUUAGUUCCCUCUCUCGCUUUUCCCUUUUGCGCUUUUCUGCGUGAAAAGGAGAAGACUCCGCA ...............((((....))))((((.......((......))....(((((((.(((..(((......)))..))).)))))))...)))). (-24.56 = -24.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:05 2006