Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 15,151,172 – 15,151,286 |
Length | 114 |
Max. P | 0.713013 |
Location | 15,151,172 – 15,151,286 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 76.60 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -15.23 |
Energy contribution | -14.96 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.03 |
Structure conservation index | 0.74 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 15151172 114 - 27905053 AAUCAGCA---ACAAAAACAUCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUUUCAGUCCCAGGAAAAGCGCUCAUU ....(((.---...........(((((((((............)))))))))....((((((((((((..............)))))))))).....((....))...))))).... ( -20.84) >DroPse_CAF1 84419 101 - 1 AAGGAGCA---GCAAAAGCAGCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUUGUGCAGGUGAGUUUUACUCUAAAA------------- ..((((..---((....)).(((((((((((............)))))))))....))((((((((((..((.......)).))))))))))....))))....------------- ( -20.20) >DroYak_CAF1 76402 114 - 1 AAUCCACA---ACAAAAACACCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACGGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUUAACUUCCCAGAAAAAGCGCCCAUU ........---...........(((((((((............)))))))))...(((((((((((((..............))))))))))...(((........))).))).... ( -18.94) >DroMoj_CAF1 86898 104 - 1 -CGAAGCA---ACAAUAACAGCAAUAAACAUGCAGUGGAUUAAAUGUUUAUUAACCGCAUUUAUUUGCUUCACAAUCAUUGUGCAGGUAAGUUCUACUCUC---------UCUCUCC -.......---.........(((.......)))((((((.(((((((.........)))))))(((((((((((.....)))).))))))).))))))...---------....... ( -17.80) >DroAna_CAF1 73288 101 - 1 CAUCAUCCACCUCCA-GAAAUCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUGGUGG------GG--------CAU- .....((((((....-......(((((((((............)))))))))......((((((((((..............)))))))))))))))------).--------...- ( -25.44) >DroPer_CAF1 81029 101 - 1 AAGGAGCA---GCAAAAGCAGCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUUGUGCAGGUGAGUUUUACUCUAAAA------------- ..((((..---((....)).(((((((((((............)))))))))....))((((((((((..((.......)).))))))))))....))))....------------- ( -20.20) >consensus AAGCAGCA___ACAAAAACAGCAAUAAACAUGCAUUGGAUUAAAUGUUUAUUAACAGCAUUCAUUUGCUUCACAGUCAUCGUGCAGGUGAGUUUUACUCUCA_A_________CAU_ ......................(((((((((............)))))))))......((((((((((..............))))))))))......................... (-15.23 = -14.96 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:05:04 2006