Locus 58

Sequence ID 3R_DroMel_CAF1
Location 330,750 – 330,868
Length 118
Max. P 0.597183
window96

overview

Window 6

Location 330,750 – 330,868
Length 118
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 86.33
Mean single sequence MFE -33.37
Consensus MFE -26.15
Energy contribution -25.98
Covariance contribution -0.16
Combinations/Pair 1.26
Mean z-score -2.10
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.597183
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 330750 118 + 27905053
AAUCGUUUCUCUUCCUCUUCCUGGAUACGCUUCAUCUCCUUUAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACGCAAUCAUUUCAUGGGUGACCUCCGGAUGAACAA
............(((.......)))...(.(((((((.........((((..((((((((((.....)).))))))))..)))).............((....))...)))))))).. ( -33.60)
>DroSec_CAF1 13225 118 + 1
AAUCUUUUCUCUUCCUCCGCUUGGAUACGCUUCAUCUCCUUUAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACGA
............(((.......)))..((.(((((((........(((((..((((((((((.....)).))))))))..)))))...((((((...)))))).....))))))))). ( -33.80)
>DroSim_CAF1 8244 118 + 1
AAUCUUUGCUCUUCCUCCGCUUGGAUACGCUUCAUCUCCUUUAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACGA
.((((..((.........))..)))).((.(((((((........(((((..((((((((((.....)).))))))))..)))))...((((((...)))))).....))))))))). ( -35.90)
>DroEre_CAF1 11066 118 + 1
AAUCGUUUCUCCUCCUCCAUCUGGAUACGCUUCAUCUCCUUGAUUUGUGCAUCCAAGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACAA
.................((((((((..((((.(((.....((((((((((..(((..(((((.....)).)))..)))..))))).)))))....)))))))...))))))))..... ( -36.70)
>DroYak_CAF1 10368 118 + 1
AAUAGUUUCUCUUCCUCCACCUGGAUACGCUUCAUCUCUUUGAUUUGUGCAUCCAAGUCUGCUUUGUGCUGUAUCUGGCGGCACACAAUCAUUUCAUGAGUAACCUCUGGAUGAACAA
...........(((.((((..(((((.(((.(((......)))...))).)))))((..(((((((((((((.....))))))))............)))))..)).)))).)))... ( -28.80)
>DroAna_CAF1 15070 118 + 1
AACUUCUUCUCCUCCUCAGCCUGGAUGCGCUUCAUUUCAACGAUCUGAGCGUCCAGAUCGGCCUUGUACUUGAUCUGUCGGCAUAACUUCAUCUCGUGGGUGAUCUCCGGAUGGACGA
.......((((((((...(((.((((((.(.((........))...).))))))(((((((........)))))))...)))......(((((.....))))).....))).))).)) ( -31.40)
>consensus
AAUCGUUUCUCUUCCUCCGCCUGGAUACGCUUCAUCUCCUUGAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACAA
............(((.......)))...(.(((((((........(((((..((((((((((.....)).))))))))..)))))...(((((.....))))).....)))))))).. (-26.15 = -25.98 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:40 2006