Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 330,750 – 330,868 |
Length | 118 |
Max. P | 0.597183 |
Location | 330,750 – 330,868 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 86.33 |
Mean single sequence MFE | -33.37 |
Consensus MFE | -26.15 |
Energy contribution | -25.98 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.26 |
Mean z-score | -2.10 |
Structure conservation index | 0.78 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 330750 118 + 27905053 AAUCGUUUCUCUUCCUCUUCCUGGAUACGCUUCAUCUCCUUUAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACGCAAUCAUUUCAUGGGUGACCUCCGGAUGAACAA ............(((.......)))...(.(((((((.........((((..((((((((((.....)).))))))))..)))).............((....))...)))))))).. ( -33.60) >DroSec_CAF1 13225 118 + 1 AAUCUUUUCUCUUCCUCCGCUUGGAUACGCUUCAUCUCCUUUAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACGA ............(((.......)))..((.(((((((........(((((..((((((((((.....)).))))))))..)))))...((((((...)))))).....))))))))). ( -33.80) >DroSim_CAF1 8244 118 + 1 AAUCUUUGCUCUUCCUCCGCUUGGAUACGCUUCAUCUCCUUUAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACGA .((((..((.........))..)))).((.(((((((........(((((..((((((((((.....)).))))))))..)))))...((((((...)))))).....))))))))). ( -35.90) >DroEre_CAF1 11066 118 + 1 AAUCGUUUCUCCUCCUCCAUCUGGAUACGCUUCAUCUCCUUGAUUUGUGCAUCCAAGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACAA .................((((((((..((((.(((.....((((((((((..(((..(((((.....)).)))..)))..))))).)))))....)))))))...))))))))..... ( -36.70) >DroYak_CAF1 10368 118 + 1 AAUAGUUUCUCUUCCUCCACCUGGAUACGCUUCAUCUCUUUGAUUUGUGCAUCCAAGUCUGCUUUGUGCUGUAUCUGGCGGCACACAAUCAUUUCAUGAGUAACCUCUGGAUGAACAA ...........(((.((((..(((((.(((.(((......)))...))).)))))((..(((((((((((((.....))))))))............)))))..)).)))).)))... ( -28.80) >DroAna_CAF1 15070 118 + 1 AACUUCUUCUCCUCCUCAGCCUGGAUGCGCUUCAUUUCAACGAUCUGAGCGUCCAGAUCGGCCUUGUACUUGAUCUGUCGGCAUAACUUCAUCUCGUGGGUGAUCUCCGGAUGGACGA .......((((((((...(((.((((((.(.((........))...).))))))(((((((........)))))))...)))......(((((.....))))).....))).))).)) ( -31.40) >consensus AAUCGUUUCUCUUCCUCCGCCUGGAUACGCUUCAUCUCCUUGAUUUGUGCAUCCAGGUCUGCUUUGUGCUGGAUCUGGCGGCACACAAUCAUUUCAUGAGUGACCUCCGGAUGAACAA ............(((.......)))...(.(((((((........(((((..((((((((((.....)).))))))))..)))))...(((((.....))))).....)))))))).. (-26.15 = -25.98 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:40 2006